| ^ gcc -O3 -Wall -DGCC -DLinux -O2 -pipe -march=native -fno-diagnostics-color -DINIT -o grappa convert.o labeltree.o main.o binencode.o gen_tree.o inittree.o circ_order.o lk_main.o bbtsp.o condense.o const_tree.o greedy_median.o invdist.o uf.o neighborj.o condense3.o getopt3.o randomBSD.o cheaptsp.o specialtsp.o specialinit.o read_input.o circular_ordering.o correction.o inversion_median.o inversion_median_alberto.o priority_stack.o hashtable.o med_util.o simpleio.o vertex_factory.o growTree.o bitvector.o lists.o sorting_reversal_median.o mythread_rwlock.o all_sorting_reversals.o -lm -lc -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x28): multiple definition of `id'; labeltree.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: main.o:(.bss+0x30): multiple definition of `genupd'; labeltree.o:(.bss+0x8): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-libressl_science-20201116-220441 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.2.0 * /usr/lib/llvm/11 11.0.0 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python2.7 (fallback) The following VMs are available for generation-2: *) AdoptOpenJDK 8.272_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Wed Nov 18 12:06:23 AM UTC 2020 /var/db/repos/libressl Sat Nov 7 03:06:11 PM UTC 2020 emerge -qpvO sci-biology/grappa [ebuild N ] sci-biology/grappa-2.0
Created attachment 672268 [details] emerge-info.txt
Created attachment 672271 [details] emerge-history.txt
Created attachment 672274 [details] environment
Created attachment 672277 [details] etc.portage.tbz2
Created attachment 672280 [details] sci-biology:grappa-2.0:20201118-001535.log
Created attachment 672283 [details] temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/proj/sci.git/commit/?id=9abaa3304eb07a14b179b925cffd428a8ffd4681 commit 9abaa3304eb07a14b179b925cffd428a8ffd4681 Author: Jakov Smolic <jakov.smolic@sartura.hr> AuthorDate: 2021-02-20 20:52:34 +0000 Commit: Jakov Smolic <jakov.smolic@sartura.hr> CommitDate: 2021-02-20 21:57:41 +0000 sci-biology/grappa: Apply gcc-10 workaround Closes: https://bugs.gentoo.org/755311 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> sci-biology/grappa/files/grappa-2.0-inline.patch | 18 ++++++++++++++++++ sci-biology/grappa/grappa-2.0.ebuild | 9 +++++++++ 2 files changed, 27 insertions(+)
