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Bug 726464 - sys-libs/talloc-2.3.1: emerge hangs during configure phase
Summary: sys-libs/talloc-2.3.1: emerge hangs during configure phase
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo's SAMBA Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-05-31 16:36 UTC by Romain Bezut
Modified: 2021-09-06 06:10 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
talloc-2.3.1: build.log (build.log,28.51 KB, text/plain)
2020-06-01 11:35 UTC, Romain Bezut
Details

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Description Romain Bezut 2020-05-31 16:36:43 UTC
This is extremely similar to issue #683148 but this time on talloc.
There is a (deterministic in my situation) race condition with WAF.

I traced it back to `buildtools/wafsamba/samba_autoconf.py` in function `CHECK_HEADERS`, while checking for `setproctitle`.
Adding --jobs 1 to the waf arguments provided by the ebuild file does fix the issue.
This is again very similar to what has already been applied here:
https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3da2f8152d78ab8128d35edc8764af1541403a46

Maybe for the sake of preventing future issues of the like, we could consider automatically adding `--jobs 1` in `waf-utils.eclass` or make it respectful of `MAKEOPTS` as suggested by issue #715542.

=================================================================
Here is the content of `emerge --info` on the machine:
=================================================================

Portage 2.3.99 (python 3.6.10-final-0, default/linux/amd64/17.1, gcc-9.2.0, glibc-2.30-r8, 5.6.15-z x86_64)
=================================================================
System uname: Linux-5.6.15-z-x86_64-Intel-R-_Core-TM-_i5-4690S_CPU_@_3.20GHz-with-gentoo-2.6
KiB Mem:    16325948 total,  13533824 free
KiB Swap:    2097148 total,   2097148 free
Timestamp of repository gentoo: Sun, 31 May 2020 13:30:01 +0000
Head commit of repository gentoo: 1b76343af3ea4da0cf9dba731990a57c38a8cb85
Head commit of repository wsdd: 0d1c428fed14bdccf6fe5f1bd3cc2c4b9e92d516
sh bash 5.0_p17
ld GNU ld (Gentoo 2.33.1 p2) 2.33.1  
app-shells/bash:          5.0_p17::gentoo
dev-lang/perl:            5.30.1::gentoo                  
dev-lang/python:          2.7.18::gentoo, 3.6.10-r2::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo
dev-util/cmake:           3.16.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo               
sys-devel/autoconf:       2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.33.1-r1::gentoo
sys-devel/gcc:            8.4.0::gentoo, 9.2.0-r2::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r8::gentoo                                                                                                                                                                                                      
Repositories:                     
                                                           
gentoo                                                                                                                                                                                                                                         
    location: /usr/portage
    sync-type: rsync                                                                                                                                                                                                                           
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage                                                                                                                                                                                          
    priority: -1000
    sync-rsync-verify-metamanifest: yes                                                                                                                                                                                                        
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts:       
    sync-rsync-verify-max-age: 24
                                                           
local                         
    location: /usr/local/portage
    masters: gentoo                                                                                                                                                                                                                            
    priority: 0
                                                           
wsdd                                                                                                                                                                                                                                           
    location: /usr/local/portage-wsdd                                                                                                                                                                                                          
    sync-type: git                                                                                                                                                                                                                             
    sync-uri: https://github.com/christgau/wsdd-gentoo.git                                                                                                                                                                                     
    masters: gentoo                                                                                                                                                                                                                            
                                               
ACCEPT_KEYWORDS="amd64"                                                                                                                                                                                                                        
ACCEPT_LICENSE="*"                                                                                                                                                                                                                             
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=native"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect
-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS=" https://mirror.netcologne.de/gentoo/ http://gentoo.mirrors.ovh.net/gentoo-distfiles/ http://ftp.free.fr/mirrors/ftp.gentoo.org/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git
"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 caps cli crypt dri fortran gdbm iconv ipv6 libtirpc multilib ncurses nls nptl openldap openmp pam pcre readline sasl seccomp split-usr ssl tcpd unicode vim-syntax xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" 
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core s
ocache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_c
ache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLL
ECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsc
lock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk h
d44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYT
HON_TARGETS="python2_7 python3_6 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface g
eoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
=================================================================


Thanks!

Reproducible: Always
Comment 1 Jonas Stein gentoo-dev 2020-05-31 20:52:07 UTC
Thank you for the report. We need to have all information at hand before ticket assignment. That is why I ask you to 
* attach the logs and 
* paste the emerge info 
as described on https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket
Please reopen this ticket (Status:UNCONFIRMED) afterwards.
Comment 2 Lars Wendler (Polynomial-C) gentoo-dev 2020-06-01 03:33:26 UTC
A build.log file with the error you described would be quite handy especially since you seem to have this problem on amd64 hardware while bug #683148 did not affect amd64.

Generally I agree. We should get this "--jobs 1" into waf-utils.eclass to prevent more packages of suffering  from this problem.
Comment 3 Romain Bezut 2020-06-01 11:35:29 UTC
Created attachment 643022 [details]
talloc-2.3.1: build.log

No error is raised since the configure phase just hangs on the configure phase while running waf configure (while checking `setproctitle`, and this is weirdly  reproducible).

On another machine where this package is installed the configure phase just runs fine, and the use flags are identical. Both machines differ by the number of cores and therefore the number of waf threads, but I cannot point any difference that would help to explain the issue reported here.
Comment 4 Marcin Mirosław 2020-08-17 19:54:00 UTC
I have the same error. configure fails on

Checking for res_search in resolv :

or

Checking for header libintl.h 

probably this is random.

Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.0, gcc-9.2.0, glibc-2.31-r6, 4.19.86-gentoo x86_64)
=================================================================                                                                                                                                            System uname: Linux-4.19.86-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E3-1230_V2_@_3.30GHz-with-gentoo-2.6                                                                                                          KiB Mem:     1016876 total,    333876 free
KiB Swap:    1048572 total,   1030140 free                                                                                                                                                                   Timestamp of repository gentoo: Mon, 17 Aug 2020 10:06:36 +0000                                                                                                                                              Head commit of repository gentoo: 60412fb90fedc61a48f9d1986663688253cfadca                                                                                                                                   
sh bash 5.0_p17                                                                                                                                                                                              ld GNU ld (Gentoo 2.33.1 p2) 2.33.1
ccache version 3.7.9 [enabled]
app-shells/bash:          5.0_p17::gentoo
dev-lang/perl:            5.30.3::gentoo
dev-lang/python:          2.7.18::gentoo, 3.6.10::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo
dev-util/ccache:          3.7.9::gentoo
dev-util/cmake:           3.14.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.33.1-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.31-r6::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/repo/sync/gentoo.git
    priority: -1000

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=core2 -mtune=native -fpeel-loops -ftracer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=core2 -mtune=native -fpeel-loops -ftracer"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs ccache cgroup collision-protect compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox multilib-strict
network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="pl_PL.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--sort-common"
MAKEOPTS="-j2 -l4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl acpi aio amd64 bash-completion caps cli dri iconv idn libglvnd libtirpc mmxext multilib ncurses nls nptl openmp pcre readline seccomp split-usr sse3 ssl ssse3 threads unicode vhosts vim-syntax xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses
text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2 php7-3" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="tarpit"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 5 antonello 2021-09-06 06:10:05 UTC
The same thing happened to me.
I wanted to install samba on ~arm64.
when I got to sys-libs/talloc-2.3.1 it failed to configure.

i tried several times even setting MAKEOPTS="-j1" .

then i gave an emerge --depclean, it deleted all the packages (samba dependencies) it had compiled so far and i gave emerge samba again, and here's the surprise, the compilation came to an end.
Did it change the order in which the dependencies were compiled? I don't know, I haven't checked...

on ~amd64 architecture i had no problem.