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Bug 725316 - sci-biology/wgs-assembler calls g++ directly
Summary: sci-biology/wgs-assembler calls g++ directly
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
Depends on:
Blocks: tc-directly
  Show dependency tree
Reported: 2020-05-25 13:11 UTC by Agostino Sarubbo
Modified: 2020-06-21 17:41 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

build.log.bz2 (build.log.bz2,110.79 KB, application/x-bzip2)
2020-05-25 13:11 UTC, Agostino Sarubbo

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Description Agostino Sarubbo gentoo-dev 2020-05-25 13:11:27 UTC
This is an auto-filed bug because sci-biology/wgs-assembler calls g++ directly.
The issue was originally discovered on amd64, but it may be reproducible on other arches as well.
If you think that a different summary clarifies the issue better, feel free to change it.
Attached build log and emerge --info.

If you think it doesn't make sense fix these type of issues, I'd like to point out that won't be possible use a different CXX implementation (like clang++) by setting the CXX variable. So this issue has been reproduced by setting the CXX variable to x86_64-pc-linux-gnu-g++ and by removing the /usr/bin/g++ - /usr/bin/c++ binaries.
Comment 1 Agostino Sarubbo gentoo-dev 2020-05-25 13:11:34 UTC
Created attachment 641722 [details]

build log and emerge --info
Comment 2 Larry the Git Cow gentoo-dev 2020-06-21 17:41:28 UTC
The bug has been closed via the following commit(s):

commit a21b58f18f8571ceb3d4f2fdf5abc90a3a4b8569
Author:     David Seifert <>
AuthorDate: 2020-06-21 17:41:01 +0000
Commit:     David Seifert <>
CommitDate: 2020-06-21 17:41:01 +0000

    sci-biology/wgs-assembler: [QA] Pass CC/CXX to build system
    Package-Manager: Portage-2.3.101, Repoman-2.3.22
    Signed-off-by: David Seifert <>

 .../files/wgs-assembler-7.0-build.patch            | 108 +++++++++++++--------
 .../wgs-assembler/wgs-assembler-7.0-r2.ebuild      |  22 ++---
 2 files changed, 76 insertions(+), 54 deletions(-)