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Bug 715874 - sci-biology/wgs-assembler-7.0-r2 : uidserver_common.h: error: invalid conversion from uint64* {aka long unsigned int*} to u_quad_t
Summary: sci-biology/wgs-assembler-7.0-r2 : uidserver_common.h: error: invalid convers...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo musl team
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks: missing-musl-includes
  Show dependency tree
 
Reported: 2020-04-02 07:28 UTC by Toralf Förster
Modified: 2021-09-04 07:02 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.22 KB, text/plain)
2020-04-02 07:28 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,210.78 KB, text/plain)
2020-04-02 07:28 UTC, Toralf Förster
Details
environment (environment,78.14 KB, text/plain)
2020-04-02 07:28 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,18.19 KB, application/x-bzip)
2020-04-02 07:28 UTC, Toralf Förster
Details
sci-biology:wgs-assembler-7.0-r2:20200402-042627.log (sci-biology:wgs-assembler-7.0-r2:20200402-042627.log,610.02 KB, text/plain)
2020-04-02 07:28 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,37.17 KB, application/x-bzip)
2020-04-02 07:28 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-04-02 07:28:23 UTC
In file included from uidserver.C:24:
uidserver_common.h: In function int32 recvMessage(int32, UIDserverMessage*):
uidserver_common.h:202:32: error: invalid conversion from uint64* {aka long unsigned int*} to u_quad_t* {aka long long unsigned int*} [-fpermissive]
  202 |   success += xdr_u_hyper(&xdr, &mesg->message);
      |                                ^~~~~~~~~~~~~~
      |                                |

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl_hardened-20200328-201618

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *

timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Thu Apr  2 03:37:36 UTC 2020
/var/db/repos/musl	Fri Mar 27 00:25:27 UTC 2020

emerge -qpvO sci-biology/wgs-assembler
[ebuild  N    ] sci-biology/wgs-assembler-7.0-r2  USE="-static-libs"
Comment 1 Toralf Förster gentoo-dev 2020-04-02 07:28:26 UTC
Created attachment 628892 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-04-02 07:28:29 UTC
Created attachment 628894 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-04-02 07:28:33 UTC
Created attachment 628896 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-04-02 07:28:37 UTC
Created attachment 628898 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-04-02 07:28:43 UTC
Created attachment 628900 [details]
sci-biology:wgs-assembler-7.0-r2:20200402-042627.log
Comment 6 Toralf Förster gentoo-dev 2020-04-02 07:28:47 UTC
Created attachment 628902 [details]
temp.tbz2
Comment 7 Larry the Git Cow gentoo-dev 2021-08-05 08:33:41 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3bb969235bd365889ce11029fabbf20b50baed7c

commit 3bb969235bd365889ce11029fabbf20b50baed7c
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-08-05 08:33:24 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-08-05 08:33:24 +0000

    profiles: last-rite sci-biology/wgs-assembler
    
    Bug: https://bugs.gentoo.org/610094
    Bug: https://bugs.gentoo.org/715874
    Bug: https://bugs.gentoo.org/731860
    Bug: https://bugs.gentoo.org/739486
    Signed-off-by: David Seifert <soap@gentoo.org>

 profiles/package.mask | 7 +++++++
 1 file changed, 7 insertions(+)
Comment 8 Larry the Git Cow gentoo-dev 2021-09-04 07:02:13 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=646bf3998bdd7dce3da0f3ad2bd03e201361a391

commit 646bf3998bdd7dce3da0f3ad2bd03e201361a391
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2021-09-04 06:56:40 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2021-09-04 07:01:52 +0000

    sci-biology/wgs-assembler: Remove last-rited package
    
    Closes: https://bugs.gentoo.org/610094
    Closes: https://bugs.gentoo.org/715874
    Closes: https://bugs.gentoo.org/731860
    Closes: https://bugs.gentoo.org/739486
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                              |   7 -
 sci-biology/wgs-assembler/Manifest                 |   1 -
 .../files/wgs-assembler-7.0-build.patch            | 257 ---------------------
 .../files/wgs-assembler-7.0-libtirpc.patch         |  16 --
 sci-biology/wgs-assembler/metadata.xml             |  11 -
 .../wgs-assembler/wgs-assembler-7.0-r2.ebuild      |  66 ------
 6 files changed, 358 deletions(-)