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Bug 710970 - sci-biology/trnascan-se-1.31 : ebuild uses colon (:) as a sed delimiter
Summary: sci-biology/trnascan-se-1.31 : ebuild uses colon (:) as a sed delimiter
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: colon-in-CFLAGS
  Show dependency tree
 
Reported: 2020-02-27 17:57 UTC by Toralf Förster
Modified: 2020-02-27 18:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.72 KB, text/plain)
2020-02-27 17:57 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,233.04 KB, text/plain)
2020-02-27 17:57 UTC, Toralf Förster
Details
environment (environment,58.05 KB, text/plain)
2020-02-27 17:57 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,15.70 KB, application/x-bzip)
2020-02-27 17:57 UTC, Toralf Förster
Details
sci-biology:trnascan-se-1.31:20200227-114438.log (sci-biology:trnascan-se-1.31:20200227-114438.log,1.86 KB, text/plain)
2020-02-27 17:57 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,15.18 KB, application/x-bzip)
2020-02-27 17:58 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-02-27 17:57:44 UTC
>>> Source unpacked in /var/tmp/portage/sci-biology/trnascan-se-1.31/work
>>> Preparing source in /var/tmp/portage/sci-biology/trnascan-se-1.31/work/tRNAscan-SE-1.3.1 ...
 * Applying trnascan-se-1.31-ldflags.patch ...
 [ ok ]
sed: -e expression #5, char 83: unknown option to `s'
 * ERROR: sci-biology/trnascan-se-1.31::gentoo failed (prepare phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib_hardened-20200222-052733

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.6
  [3]   python3.7 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.41.0 *


ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Thu, 27 Feb 2020 10:08:10 +0000

emerge -qpvO sci-biology/trnascan-se
[ebuild  N    ] sci-biology/trnascan-se-1.31
Comment 1 Toralf Förster gentoo-dev 2020-02-27 17:57:46 UTC
Created attachment 616334 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-02-27 17:57:49 UTC
Created attachment 616336 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-02-27 17:57:52 UTC
Created attachment 616338 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-02-27 17:57:54 UTC
Created attachment 616340 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-02-27 17:57:57 UTC
Created attachment 616342 [details]
sci-biology:trnascan-se-1.31:20200227-114438.log
Comment 6 Toralf Förster gentoo-dev 2020-02-27 17:58:00 UTC
Created attachment 616344 [details]
temp.tbz2