x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c SAalignmm.c -o SAalignmm.o x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c treeOperation.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c addfunctions.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -O2 -pipe -march=native -fno-common -Wno-unused-result -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: mltaln9.o:(.bss+0x0): multiple definition of `tsize'; io.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: mltaln9.o:(.bss+0x4): multiple definition of `maxl'; io.o:(.bss+0x4): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop-libressl-20200125-232521 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) IcedTea JDK 3.14.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 system-vm ghc: The Glorious Glasgow Haskell Compilation System, version 8.0.2 repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Fri, 31 Jan 2020 20:47:54 +0000 emerge -qpvO sci-biology/mafft [ebuild N ] sci-biology/mafft-7.305 USE="-threads"
Created attachment 610352 [details] emerge-info.txt
Created attachment 610354 [details] emerge-history.txt
Created attachment 610356 [details] environment
Created attachment 610358 [details] etc.portage.tbz2
Created attachment 610360 [details] sci-biology:mafft-7.305:20200131-230442.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b2e205cd00f9cf8b4e13e159750a68f964b4862a commit b2e205cd00f9cf8b4e13e159750a68f964b4862a Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-04-22 09:29:40 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-04-22 09:29:40 +0000 sci-biology/mafft: Fix -fno-common / GCC 10 Closes: https://bugs.gentoo.org/707738 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/mafft/files/mafft-7.305-fno-common.patch | 8 ++++++++ sci-biology/mafft/mafft-7.305.ebuild | 3 ++- 2 files changed, 10 insertions(+), 1 deletion(-)
