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Bug 707240 - sci-libs/sundials-5.0.0 : fails to build with -fno-common or gcc-10
Summary: sci-libs/sundials-5.0.0 : fails to build with -fno-common or gcc-10
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: -fno-common
  Show dependency tree
 
Reported: 2020-01-29 18:11 UTC by Toralf Förster
Modified: 2020-01-29 18:11 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.17 KB, text/plain)
2020-01-29 18:11 UTC, Toralf Förster
Details
CMakeCache.txt (CMakeCache.txt,11.87 KB, text/plain)
2020-01-29 18:11 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,179.12 KB, text/plain)
2020-01-29 18:11 UTC, Toralf Förster
Details
environment (environment,94.62 KB, text/plain)
2020-01-29 18:11 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,15.63 KB, application/x-bzip)
2020-01-29 18:11 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,7.51 KB, application/x-bzip)
2020-01-29 18:11 UTC, Toralf Förster
Details
sci-libs:sundials-5.0.0:20200129-125558.log (sci-libs:sundials-5.0.0:20200129-125558.log,448.08 KB, text/plain)
2020-01-29 18:11 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,33.21 KB, application/x-bzip)
2020-01-29 18:11 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-01-29 18:11:06 UTC
cd /var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0_build/examples/arkode/F77_serial && /usr/bin/x86_64-pc-linux-gnu-gfortran  -I/var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0/include -I/var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0_build/include  -O2 -pipe -march=native -fno-common -O2 -pipe -march=native -fno-common   -o CMakeFiles/fark_diurnal_kry_bp.dir/fark_diurnal_kry_bp.f.o -c /var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0/examples/arkode/F77_serial/fark_diurnal_kry_bp.f
[ 83%] Linking Fortran executable fark_diurnal_kry_bp
cd /var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0_build/examples/arkode/F77_serial && /usr/bin/cmake -E cmake_link_script CMakeFiles/fark_diurnal_kry_bp.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-gfortran  -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common CMakeFiles/fark_diurnal_kry_bp.dir/fark_diurnal_kry_bp.f.o  -o fark_diurnal_kry_bp  -Wl,-rpath,/var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0_build/src/arkode:/var/tmp/portage/sci-libs/sundials-5.0.0/work/sundials-5.0.0_build/src/nvector/serial ../../../src/arkode/fcmix/libsundials_farkode.a ../../../src/arkode/libsundials_arkode.so.4.0.0 ../../../src/nvector/serial/libsundials_fnvecserial.so.5.0.0 ../../../src/nvector/serial/libsundials_nvecserial.so.5.0.0 -lm /usr/lib64/librt.so -lm 
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x18): multiple definition of `F2C_IDA_linsol'; ../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x18): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x8): multiple definition of `F2C_ARKODE_linsol'; ../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8): first defined here

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-libressl-20200125-150902

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.40.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.14.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Wed, 29 Jan 2020 11:46:22 +0000

emerge -qpvO sci-libs/sundials
[ebuild  N    ] sci-libs/sundials-5.0.0  USE="cxx fortran openmp -doc -examples -hypre -lapack -mpi -sparse -static-libs -superlumt -threads"
Comment 1 Toralf Förster gentoo-dev 2020-01-29 18:11:08 UTC
Created attachment 608122 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-01-29 18:11:11 UTC
Created attachment 608124 [details]
CMakeCache.txt
Comment 3 Toralf Förster gentoo-dev 2020-01-29 18:11:15 UTC
Created attachment 608126 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2020-01-29 18:11:18 UTC
Created attachment 608128 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2020-01-29 18:11:22 UTC
Created attachment 608130 [details]
etc.portage.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-01-29 18:11:26 UTC
Created attachment 608132 [details]
logs.tbz2
Comment 7 Toralf Förster gentoo-dev 2020-01-29 18:11:29 UTC
Created attachment 608134 [details]
sci-libs:sundials-5.0.0:20200129-125558.log
Comment 8 Toralf Förster gentoo-dev 2020-01-29 18:11:33 UTC
Created attachment 608136 [details]
temp.tbz2