x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -O2 -pipe -march=native -fno-common -c -o ame-ramen_scan.o `test -f 'ramen_scan.c' || echo './'`ramen_scan.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -O2 -pipe -march=native -fno-common -c -o ame-fisher_exact.o `test -f 'fisher_exact.c' || echo './'`fisher_exact.c /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -O2 -pipe -march=native -fno-common -Wl,-O1 -Wl,--as-needed -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o libcommon.la -lxml2 -lm -lmpi -lz -lm libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -O2 -pipe -march=native -fno-common -Wl,-O1 -o ame ame-ame.o ame-ramen_scan.o ame-fisher_exact.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -lgcrypt -lgpg-error -lxml2 -lmpi -lz -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ame-fisher_exact.o:(.bss+0x20): multiple definition of `log_factorial'; ame-ame.o:(.bss+0x0): first defined here collect2: error: ld returned 1 exit status ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-20200124-204141 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) AdoptOpenJDK 8.242_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Wed, 29 Jan 2020 00:26:22 +0000 emerge -qpvO sci-biology/meme [ebuild N ] sci-biology/meme-4.11.2_p2 USE="-debug -doc -examples -mpi" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7"
Created attachment 607630 [details] emerge-info.txt
Created attachment 607632 [details] emerge-history.txt
Created attachment 607634 [details] environment
Created attachment 607636 [details] etc.portage.tbz2
Created attachment 607638 [details] logs.tbz2
Created attachment 607640 [details] sci-biology:meme-4.11.2_p2:20200129-020308.log
Created attachment 607642 [details] temp.tbz2
Package removed.