Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 707150 - sci-biology/phylip-3.696-r2 : fails to build with -fno-common or gcc-10
Summary: sci-biology/phylip-3.696-r2 : fails to build with -fno-common or gcc-10
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: -fno-common
  Show dependency tree
 
Reported: 2020-01-29 17:42 UTC by Toralf Förster
Modified: 2020-01-29 17:43 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.85 KB, text/plain)
2020-01-29 17:42 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,136.05 KB, text/plain)
2020-01-29 17:42 UTC, Toralf Förster
Details
environment (environment,41.27 KB, text/plain)
2020-01-29 17:42 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,12.74 KB, application/x-bzip)
2020-01-29 17:42 UTC, Toralf Förster
Details
sci-biology:phylip-3.696-r2:20200129-000011.log (sci-biology:phylip-3.696-r2:20200129-000011.log,2.91 KB, text/plain)
2020-01-29 17:43 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2020-01-29 17:42:46 UTC
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o clique.o clique.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o disc.o disc.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result   -c -o phylip.o phylip.c
x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wno-unused-result clique.o disc.o phylip.o -lm -o clique
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x38): multiple definition of `firstplotblock'; clique.o:(.bss+0x628): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x39): multiple definition of `javarun'; clique.o:(.bss+0x629): first defined here

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop-libressl-20200125-232521

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.40.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.14.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Tue, 28 Jan 2020 23:06:26 +0000

emerge -qpvO sci-biology/phylip
[ebuild  N    ] sci-biology/phylip-3.696-r2
Comment 1 Toralf Förster gentoo-dev 2020-01-29 17:42:49 UTC
Created attachment 607528 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-01-29 17:42:52 UTC
Created attachment 607530 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-01-29 17:42:55 UTC
Created attachment 607532 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-01-29 17:42:58 UTC
Created attachment 607534 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-01-29 17:43:00 UTC
Created attachment 607536 [details]
sci-biology:phylip-3.696-r2:20200129-000011.log