x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c -o clique.o clique.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c -o disc.o disc.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -Wno-unused-result -c -o phylip.o phylip.c x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-common -Wno-unused-result clique.o disc.o phylip.o -lm -o clique /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x38): multiple definition of `firstplotblock'; clique.o:(.bss+0x628): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x39): multiple definition of `javarun'; clique.o:(.bss+0x629): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop-libressl-20200125-232521 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) IcedTea JDK 3.14.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 system-vm repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Tue, 28 Jan 2020 23:06:26 +0000 emerge -qpvO sci-biology/phylip [ebuild N ] sci-biology/phylip-3.696-r2
Created attachment 607528 [details] emerge-info.txt
Created attachment 607530 [details] emerge-history.txt
Created attachment 607532 [details] environment
Created attachment 607534 [details] etc.portage.tbz2
Created attachment 607536 [details] sci-biology:phylip-3.696-r2:20200129-000011.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1f16dff22517a1d448e3d40e44621f2dd62c5c10 commit 1f16dff22517a1d448e3d40e44621f2dd62c5c10 Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-10-27 20:56:18 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-10-27 20:56:18 +0000 sci-biology/phylip: Remove old Closes: https://bugs.gentoo.org/707150 Closes: https://bugs.gentoo.org/727982 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/phylip/Manifest | 2 -- sci-biology/phylip/phylip-3.69-r1.ebuild | 51 ---------------------------- sci-biology/phylip/phylip-3.696-r1.ebuild | 54 ------------------------------ sci-biology/phylip/phylip-3.696-r2.ebuild | 55 ------------------------------- 4 files changed, 162 deletions(-) Additionally, it has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb89f8f6053ab2d65cd1c7b1604aa0a1df8bf216 commit fb89f8f6053ab2d65cd1c7b1604aa0a1df8bf216 Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-10-27 20:56:15 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-10-27 20:56:15 +0000 sci-biology/phylip: Version bump to 3.698 Bug: https://bugs.gentoo.org/707150 Bug: https://bugs.gentoo.org/727982 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/phylip/Manifest | 1 + .../phylip/files/phylip-3.698-fno-common.patch | 70 ++++++ .../phylip/files/phylip-3.698-makefile.patch | 266 +++++++++++++++++++++ sci-biology/phylip/phylip-3.698.ebuild | 60 +++++ 4 files changed, 397 insertions(+)