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Bug 704248 - sci-libs/plplot-5.15.0 - src_install(): java-pkg_regso '/usr/lib64/jni/plplotjavac_wrap.so': /usr/lib64/jni/plplotjavac_wrap.so does not exist
Summary: sci-libs/plplot-5.15.0 - src_install(): java-pkg_regso '/usr/lib64/jni/plplot...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-12-30 10:01 UTC by Martin Mokrejš
Modified: 2021-06-06 16:53 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,419.38 KB, text/plain)
2019-12-30 10:01 UTC, Martin Mokrejš
Details

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Description Martin Mokrejš 2019-12-30 10:01:05 UTC
During install phase I get:

...
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/doc/plplot-5.15.0/examples/tcl/x33
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/doc/plplot-5.15.0/examples/tcl/mktclIndex
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/man/man1/pltek.1
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/man/man1/plserver.1
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/man/man1/pltcl.1
-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/share/doc/plplot-5.15.0/README.pkg-config
 * ERROR: sci-libs/plplot-5.15.0::gentoo failed (install phase):
 *   /usr/lib64/jni/plplotjavac_wrap.so does not exist
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_install
 *   environment, line 6047:  Called java-pkg_regso '/usr/lib64/jni/plplotjavac_wrap.so'
 *   environment, line 4172:  Called die
 * The specific snippet of code:
 *                   die "${lib} does not exist";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/plplot-5.15.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/plplot-5.15.0::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=oracle-jdk-bin-1.8  CLASSPATH="" JAVA_HOME="/opt/oracle-jdk-bin-1.8.0.202"
JAVACFLAGS="-source 1.5 -target 1.5" COMPILER=""
and of course, the output of emerge --info =plplot-5.15.0
 * The complete build log is located at '/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/temp/build.log'.
 * The ebuild environment file is located at '/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/temp/environment'.
 * Working directory: '/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/work/plplot-5.15.0'
 * S: '/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/work/plplot-5.15.0'


# emerge --info

Portage 2.3.84 (python 3.7.6-final-0, default/linux/amd64/17.1/no-multilib, gcc-9.2.0, glibc-2.30-r3, 5.4.6 x86_64)
=================================================================
System uname: Linux-5.4.6-x86_64-Intel-R-_Core-TM-_i7-7820HQ_CPU_@_2.90GHz-with-gentoo-2.6
KiB Mem:    32814488 total,   9929040 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 29 Dec 2019 00:00:01 +0000
Head commit of repository gentoo: 745c331f62a23892c66b5f88ca9cd723272b4692
sh bash 5.0_p11
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          5.0_p11::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17::gentoo, 3.5.9::gentoo, 3.6.10::gentoo, 3.7.6::gentoo, 3.8.1::gentoo
dev-util/cmake:           3.16.2-r1::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r2::gentoo
sys-devel/binutils:       2.32-r1::gentoo, 2.33.1::gentoo
sys-devel/gcc:            9.2.0-r3::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r3::gentoo
Repositories:

gentoo
    location: /scratch/usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 

x-portage
    location: /scratch/usr/local/portage
    masters: gentoo
    priority: 0

x-layman
    location: /scratch/var/lib/layman
    masters: gentoo
    priority: 1

haskell
    location: /var/lib/layman/haskell
    masters: gentoo
    priority: 50

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

stefantalpalaru
    location: /var/lib/layman/stefantalpalaru
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 Nero-EULA-US AdobeFlash-10.3 AdobeFlash-11.x OPERA-2014 RAR Intel-SDP intel-ucode Skype-TOS vmware linux-firmware fasta vienna-rna unafold GRL MSttfEULA hplip-plugin meme mRNAmarkup ApE ICS ipw3945 finchtv modeller gmap master-pdf-editor abyss swiss-prot Aladdin AVASYS truecrypt-3.0 pyvcf Non-profit-OSL-3.0 estscan bcca_2010 oncotator Adobe blat staden CeCILL-1.1 phrap STRIDE cctbx-2.0 bh-luxi ARIADNE unRAR all-rights-reserved trf annovar_personal_only stampy-academic BSD-BroadInstitute UPennState freedist free-noncomm blasr sun-jlfgr FLI-Jena PSTT netperf sun-jsr67 xv vim.org OSGi-Specification-2.0 colt mod_fastcgi googleearth ACE AFL churchill genscan no-source-code linux-fw-redistributable ISSL"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf /usr/share/maven-bin-3.6/conf /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
CXXFLAGS="-O2 -pipe -march=native -ftree-vectorize"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=native -ftree-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news nostrip parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=native -ftree-vectorize"
GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LANG="cs_CZ.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en_US en_GB en cs"
MAKEOPTS="-j5"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/scratch/var/tmp"
USE="X acpi alsa amd64 amr apache apache2 asm avx avx2 berkdb bluetooth boost bzip2 cairo caps cgi cli coin consolekit cracklib crypt cryptlib cryptsetup cups cxx dbus device-mapper dhcp directfb drm dvd emboss encode fax fbcon ffmpeg flac fontconfig fortran gbm gcrypt gd gdbm geoip geolocation gimp glpk gmp gnutls gpm gps gtk hal hpijs hwdb iconv id3tag imaging innodb inotify ipv6 java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack laptop lcms libnotify libtirpc lm_sensors mad mariadb matroska mmx modemmanager ncurses nfs nls nptl nptlonly nscd nss ntfsprogs objc ocr ogg opengl openmp openssl pam parport pbs pcre pcre16 pcsc-lite pdf perl php png policykit polkit ppds pppd python qt3support qt4 qt5 readline rendering resolvconf romio scanner sctp seccomp server session slideshow sndfile split-usr sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 startup-notification suexec svg syslog tcl tcpd threads tiff tk truetype udev unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xattr xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel intel8x0 intel8x0m usb-audio" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="gpsclock navcom ntrip rtcm104v2 rtcm104v3 ublox nmea0183 nmea2000 aivdm passthrough" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en-US en-GB en cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" OPENMPI_RM="pbs" PHP_TARGETS="php5-4 php5-5" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_5 python3_6 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Martin Mokrejš 2019-12-30 10:01:51 UTC
Created attachment 601828 [details]
build.log
Comment 2 Martin Mokrejš 2019-12-30 10:10:57 UTC
I see this being installed:

-- Installing: /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/lib64/jni/libplplotjavac_wrap.so
-- Set runtime path of "/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image//usr/lib64/jni/libplplotjavac_wrap.so" to ""


The filename has changed, maybe the following is enough?

- java-pkg_regso "${EPREFIX}"/usr/$(get_libdir)/jni/plplotjavac_wrap.so
+ java-pkg_regso "${EPREFIX}"/usr/$(get_libdir)/jni/libplplotjavac_wrap.so
Comment 3 Martin Mokrejš 2019-12-30 10:18:49 UTC
I looked for the recent changes in https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bb6e02b6dd02c5f5466dc82818490693ab361f81

# grep plotjavac_wrap /usr/portage/sci-libs/plplot/files/*
/usr/portage/sci-libs/plplot/files/plplot-5.12.0-java-install-path.patch:-  install(TARGETS plplotjavac_wrap LIBRARY DESTINATION ${JAVAWRAPPER_HARDDIR})
/usr/portage/sci-libs/plplot/files/plplot-5.12.0-java-install-path.patch:+  install(TARGETS plplotjavac_wrap LIBRARY DESTINATION ${JAVAWRAPPER_DIR})
#

Maybe the install process started to prepend "lib" mysteriously? Pacho?
Comment 4 Pacho Ramos gentoo-dev 2019-12-30 11:43:16 UTC
I receive mails from sci team too
Comment 5 Martin Mokrejš 2020-02-20 17:12:58 UTC
Still an issue with sci-libs/plplot-5.15.0-r1.
Comment 6 Attila Tóth 2020-06-01 07:27:46 UTC
(In reply to Martin Mokrejš from comment #2)
> I see this being installed:
> 
> -- Installing:
> /scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image/usr/lib64/jni/
> libplplotjavac_wrap.so
> -- Set runtime path of
> "/scratch/var/tmp/portage/sci-libs/plplot-5.15.0/image//usr/lib64/jni/
> libplplotjavac_wrap.so" to ""
> 
> 
> The filename has changed, maybe the following is enough?
> 
> - java-pkg_regso "${EPREFIX}"/usr/$(get_libdir)/jni/plplotjavac_wrap.so
> + java-pkg_regso "${EPREFIX}"/usr/$(get_libdir)/jni/libplplotjavac_wrap.so

Solves the problem for me.
Comment 7 Larry the Git Cow gentoo-dev 2021-06-06 16:53:04 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cee4e91f161c8f2851f35c814494981e72ccf549

commit cee4e91f161c8f2851f35c814494981e72ccf549
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-06-06 16:52:46 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-06-06 16:52:46 +0000

    sci-libs/plplot: Fix USE=java
    
    Closes: https://bugs.gentoo.org/704248
    Package-Manager: Portage-3.0.19, Repoman-3.0.3
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/plplot/plplot-5.15.0-r101.ebuild | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)