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Bug 701790 - media-libs/opencv-4.1.2-r1 missing includes for contribs or testprograms
Summary: media-libs/opencv-4.1.2-r1 missing includes for contribs or testprograms
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Amy Liffey
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-12-02 18:19 UTC by Alexandru N. Barloiu
Modified: 2020-11-03 07:18 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,305.39 KB, text/x-log)
2019-12-03 00:49 UTC, Alexandru N. Barloiu
Details

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Description Alexandru N. Barloiu 2019-12-02 18:19:06 UTC
I have enabled all contrib useflags for opencv as follows. USE="contrib contribcvv contribdnn contribhdf contribsfm contribxfeatures2d cuda dnnsamples download eigen examples ffmpeg gdal gflags glog gphoto2 gstreamer gtk jpeg jpeg2k opencl opencvapps openexr opengl openmp pch png python qt5 tesseract testprograms threads tiff v4l vtk webp"

The build process fails because of missing includes. I won't mention all of them because they are too many to mention. But there is a logic to it. The includes exist, but they are in the wrong folder that is not pulled automatically. For instance this error:
/usr/lib/distcc/bin/x86_64-pc-linux-gnu-g++ -D_USE_MATH_DEFINES -D__OPENCV_BUILD=1 -D__OPENCV_TESTS=1 -D__STDC_CONSTANT_MACROS -D__STDC_FORMAT_MACROS -D__STDC_LIMIT_MACROS -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL2)" -DvtkRenderingOpenGL2_AUTOINIT="1(vtkRenderingGL2PSOpenGL2)" -I/usr/include/vtk-8.1 -I/usr/include/freetype2 -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/viz/src -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/viz/include -Imodules/viz -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/cudev/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/core/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/ts/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/imgcodecs/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/videoio/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/imgproc/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/highgui/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/calib3d/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/features2d/include -I/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/flann/include -isystem . -isystem /usr/include/gdal -isystem /usr/include/eigen3  -DNDEBUG -mtune=skylake-avx512 -march=skylake-avx512 -O2 -pipe   -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wuninitialized -Winit-self -Wno-delete-non-virtual-dtor -Wno-comment -Wimplicit-fallthrough=3 -Wno-strict-overflow -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -ffunction-sections -fdata-sections  -fvisibility=hidden -fvisibility-inlines-hidden -fopenmp  -Wno-suggest-override -fPIE   -std=c++11  -Winvalid-pch  -include "/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2-abi_x86_64.amd64/modules/viz/test_precomp.hpp" -MD -MT modules/viz/CMakeFiles/opencv_test_viz.dir/test/test_common.cpp.o -MF modules/viz/CMakeFiles/opencv_test_viz.dir/test/test_common.cpp.o.d -o modules/viz/CMakeFiles/opencv_test_viz.dir/test/test_common.cpp.o -c /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/viz/test/test_common.cpp
In file included from <command-line>:
/ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2-abi_x86_64.amd64/modules/viz/test_precomp.hpp:5:10: fatal error: test_common.hpp: No such file or directory
 #include "test_common.hpp"
          ^~~~~~~~~~~~~~~~~

The file is in PORTAGE_TMPDIR/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2-abi_x86_64.amd64/modules/viz/test/test_common.hpp

As you can see from the command, the path with test, is not included in includes. There are 2 simple solutions. Either copy the files from test to include, or fix the build scripts to also include paths to test directories where it is applicable. 

I went with a simple shell script. Navigates all paths and copies files from test to include. it will be loud and will output a lot of errors but none of them are fatal. However with includes copies the package merges ok after that.

cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules; for a in `ls`; do cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/modules/$a; cp -r test/* include/; done; cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2-abi_x86_64.amd64/modules/; for a in `ls`; do cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2-abi_x86_64.amd64/modules/$a; cp -r test/* include/; done; cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/; for a in `ls`; do cd /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv_contrib-4.1.2/modules/$a; cp -r test/* include/; done; mkdir -p /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/3rdparty/include/opencl/; touch /ramfs/portage/media-libs/opencv-4.1.2-r1/work/opencv-4.1.2/3rdparty/include/opencl/LICENSE.txt

Reproducible: Always

Steps to Reproduce:
1.emerge opencv
2.
3.
Comment 1 Jonas Stein gentoo-dev 2019-12-03 00:25:42 UTC
I already assign the ticket, because it could be a useful hint. 
But please recompile and 
*attach* the logfiles and 
paste the emerge info as described on
https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket
Comment 2 Alexandru N. Barloiu 2019-12-03 00:49:53 UTC
Created attachment 598302 [details]
build.log

Portage 2.3.80 (python 3.6.9-final-0, default/linux/amd64/17.1/desktop/gnome/systemd, gcc-9.2.0, glibc-2.30-r3, 5.4.1-gentoo-x86_64 x86_64)
=================================================================
System uname: Linux-5.4.1-gentoo-x86_64-x86_64-Intel-R-_Core-TM-_i9-9980XE_CPU_@_3.00GHz-with-gentoo-2.6
KiB Mem:   131654012 total,  34454508 free
KiB Swap:  134217712 total, 134217712 free
Timestamp of repository gentoo: Mon, 02 Dec 2019 17:00:01 +0000
Head commit of repository gentoo: 70c16b524be76ea56a067bc1f40188ae01775f0a
Head commit of repository dxvk: f89c8eb3d216ff6015f7567ed685fbfc9b457ec7

sh bash 5.0_p11
ld GNU ld (Gentoo 2.33.1 p1) 2.33.1
distcc 3.3.3 x86_64-pc-linux-gnu [enabled]
ccache version 3.7.6 [disabled]
app-shells/bash:          5.0_p11::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17::gentoo, 3.6.9::gentoo, 3.8.0::gentoo
dev-util/ccache:          3.7.6::gentoo
dev-util/cmake:           3.16.0::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo, 1.16.1-r2::gentoo
sys-devel/binutils:       2.33.1::gentoo
sys-devel/gcc:            8.3.0-r3::gentoo, 9.2.0-r2::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.3-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r3::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://foiofia/gentoo-portage
    priority: -1000
    sync-rsync-verify-metamanifest: no
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1

crossdev
    location: /usr/local/portage
    masters: gentoo
    priority: 0

steam-overlay
    location: /var/lib/layman/steam-overlay
    masters: gentoo
    priority: 50

dxvk
    location: /var/db/repos/dxvk
    sync-type: git
    sync-uri: https://github.com/pchome/dxvk-gentoo-overlay
    masters: gentoo
    priority: 60

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CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-mtune=skylake-avx512 -march=skylake-avx512 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-mtune=skylake-avx512 -march=skylake-avx512 -O2 -pipe"
DISTDIR="/mnt/apps/distfiles"
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FFLAGS="-mtune=skylake-avx512 -march=skylake-avx512 -O2 -pipe"
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LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_en en_EN en_US en-US en_GB en-GB ro ro_RO en ro"
MAKEOPTS="-j72"
PKGDIR="/mnt/apps/packages/spark"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/ramfs"
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gles2 glib glide glog glusterfs gme gmp gnome gnome-keyring gnome-online-accounts gnutls gold googledrive gphoto2 gpm gps graph graphviz gsm gstaudio gstreamer gstvideo gtk gtk2 gtk3 haptic harfbuzz hash hdri hfs hid2hci highlight http http2 hybrid hyphen ibus icons iconv icu id3tag idea idn inspector introspection iproute2 ipv6 javascript jbig joystick jpeg jpeg2k junction kerberos kvm lame latency_timing layers lcms libaom libass libcanberra libdrm libevent libhack libilbc libinput libmpeg2 libnotify libotf libproxy librtmp libsecret libsoxr libtar libtiger libtirpc libusb libuv libv4l libvirt libvisual libxml2 linsys live llvm lm-sensors lm_sensors lqr lto lv2 lz4 lzma lzo macosx-notifications mad mariadb math matroska mclib md5sum mdadm mdnsresponder-compat melt messages metadata-analysis-api mhash mjpeg mms mmx mmxext mng mod modplug modules mono mp3 mp3rtp mp4 mpeg mpi mtp multicore multilib multitarget musepack mysql mysqli nat nautilus ncurses netlink nfacct nfs nfsdcld nfsv41 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Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 3 Vincent Reher 2020-08-18 20:07:06 UTC
I had been experiencing the same problem. I followed the suggestion in https://github.com/opencv/opencv/issues/15381 to disable pre-compiled headers and successfully built the package.  I did this by removing package USE flag 'pch'.

Not sure if this is a workaround or a fix.
Comment 4 Larry the Git Cow gentoo-dev 2020-10-16 21:48:04 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5c21b91ad2464439514aae406a0c0d5f310aca1d

commit 5c21b91ad2464439514aae406a0c0d5f310aca1d
Author:     Ross Charles Campbell <rossbridger.cc@gmail.com>
AuthorDate: 2020-10-14 02:17:02 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2020-10-16 21:47:50 +0000

    media-libs/opencv: version bump to 4.5.0
    
    Bug: https://bugs.gentoo.org/701790
    Bug: https://bugs.gentoo.org/700176
    Bug: https://bugs.gentoo.org/717812
    Bug: https://bugs.gentoo.org/703658
    Bug: https://bugs.gentoo.org/689838
    Closes: https://bugs.gentoo.org/666716
    Closes: https://bugs.gentoo.org/747163
    Closes: https://bugs.gentoo.org/729190
    Closes: https://bugs.gentoo.org/699730
    Closes: https://bugs.gentoo.org/672840
    Package-Manager: Portage-3.0.8, Repoman-3.0.1
    
    Signed-off-by: Ross Charles Campbell <rossbridger.cc@gmail.com>
    Closes: https://github.com/gentoo/gentoo/pull/17899
    Signed-off-by: Sam James <sam@gentoo.org>

 media-libs/opencv/Manifest            |   2 +
 media-libs/opencv/opencv-4.5.0.ebuild | 555 ++++++++++++++++++++++++++++++++++
 2 files changed, 557 insertions(+)
Comment 5 Larry the Git Cow gentoo-dev 2020-11-03 07:18:35 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c92eaa6a7d93400503334e9c65df2b8e400ab90f

commit c92eaa6a7d93400503334e9c65df2b8e400ab90f
Author:     Ross Charles Campbell <rossbridger.cc@gmail.com>
AuthorDate: 2020-10-18 14:59:46 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2020-11-03 07:18:26 +0000

    media-libs/opencv: various fixes
    
     - Explicitly depends on virtual/lapacke to prevent its cmake build scripts from
    implicitly disabling lapack support when it can't find lapacke.h.
    
     - Link with cblas when sci-libs/lapack is supplimented as the default lapack
    implementation.
    
     - examples USE requires contribdnn USE to be enabled to prevent build failure.
    
    Closes: https://bugs.gentoo.org/700176
    Closes: https://bugs.gentoo.org/749681
    Closes: https://bugs.gentoo.org/717812
    Closes: https://bugs.gentoo.org/701790
    Closes: https://bugs.gentoo.org/704518
    Package-Manager: Portage-3.0.8, Repoman-3.0.1
    Signed-off-by: Ross Charles Campbell <rossbridger.cc@gmail.com>
    Closes: https://github.com/gentoo/gentoo/pull/17964
    Signed-off-by: Sam James <sam@gentoo.org>

 .../opencv-4.5.0-link-with-cblas-for-lapack.patch      | 18 ++++++++++++++++++
 media-libs/opencv/opencv-4.5.0.ebuild                  |  8 +++++++-
 2 files changed, 25 insertions(+), 1 deletion(-)