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Bug 701780 - sci-libs/dealii-9.1.1 : configuration error with cmake-3.16*
Summary: sci-libs/dealii-9.1.1 : configuration error with cmake-3.16*
Status: IN_PROGRESS
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Matthias Maier
URL: https://github.com/dealii/dealii/issu...
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-12-02 17:10 UTC by Toralf Förster
Modified: 2019-12-02 19:38 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.14 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
CMakeError.log (CMakeError.log,22.42 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
CMakeOutput.log (CMakeOutput.log,118.79 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,98.62 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
environment (environment,91.17 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,15.37 KB, application/x-bzip)
2019-12-02 17:10 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,13.55 KB, application/x-bzip)
2019-12-02 17:10 UTC, Toralf Förster
Details
sci-libs:dealii-9.1.1:20191202-012500.log (sci-libs:dealii-9.1.1:20191202-012500.log,30.50 KB, text/plain)
2019-12-02 17:10 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,26.98 KB, application/x-bzip)
2019-12-02 17:10 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-12-02 17:10:06 UTC
-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG
-- Performing Test DEAL_II_HAVE_USABLE_FLAGS_DEBUG - Failed
CMake Error at cmake/setup_finalize.cmake:137 (MESSAGE):
  

    Configuration error: Cannot compile a test program with the final set of

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-libressl-20191129-041523

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.0 (tags/RELEASE_900/final)
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.0
Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.39.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.13.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Mon, 02 Dec 2019 00:26:14 +0000

emerge -qpvO sci-libs/dealii
[ebuild  N    ] sci-libs/dealii-9.1.1  USE="debug examples gsl lapack sparse tbb -adolc -arpack -assimp -cuda -doc -gmsh -hdf5 -metis -mpi -muparser -nanoflann -netcdf -opencascade -p4est -petsc -scalapack -slepc -static-libs -sundials -symengine -trilinos" CPU_FLAGS_X86="avx sse2 -avx512f"
Comment 1 Toralf Förster gentoo-dev 2019-12-02 17:10:09 UTC
Created attachment 598238 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-12-02 17:10:12 UTC
Created attachment 598240 [details]
CMakeError.log
Comment 3 Toralf Förster gentoo-dev 2019-12-02 17:10:14 UTC
Created attachment 598242 [details]
CMakeOutput.log
Comment 4 Toralf Förster gentoo-dev 2019-12-02 17:10:17 UTC
Created attachment 598244 [details]
emerge-history.txt
Comment 5 Toralf Förster gentoo-dev 2019-12-02 17:10:20 UTC
Created attachment 598246 [details]
environment
Comment 6 Toralf Förster gentoo-dev 2019-12-02 17:10:23 UTC
Created attachment 598248 [details]
etc.portage.tbz2
Comment 7 Toralf Förster gentoo-dev 2019-12-02 17:10:26 UTC
Created attachment 598250 [details]
logs.tbz2
Comment 8 Toralf Förster gentoo-dev 2019-12-02 17:10:28 UTC
Created attachment 598252 [details]
sci-libs:dealii-9.1.1:20191202-012500.log
Comment 9 Toralf Förster gentoo-dev 2019-12-02 17:10:31 UTC
Created attachment 598254 [details]
temp.tbz2
Comment 10 Matthias Maier gentoo-dev 2019-12-02 19:38:29 UTC
This is an incompatibility with cmake-3.16:

  x86_64-pc-linux-gnu-g++: error: pthread: No such file or directory

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