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Bug 685736 - sci-biology/lagan-2.0-r3 : fchaos.c:(.text+<snip>): undefined reference to findPrev
Summary: sci-biology/lagan-2.0-r3 : fchaos.c:(.text+<snip>): undefined reference to fi...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-05-12 15:52 UTC by Toralf Förster
Modified: 2020-11-01 18:37 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.02 KB, text/plain)
2019-05-12 15:53 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,90.15 KB, text/plain)
2019-05-12 15:53 UTC, Toralf Förster
Details
environment (environment,45.52 KB, text/plain)
2019-05-12 15:53 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,11.78 KB, application/x-bzip)
2019-05-12 15:53 UTC, Toralf Förster
Details
sci-biology:lagan-2.0-r3:20190512-153834.log (sci-biology:lagan-2.0-r3:20190512-153834.log,4.62 KB, text/plain)
2019-05-12 15:53 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,12.82 KB, application/x-bzip)
2019-05-12 15:53 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-05-12 15:52:58 UTC
      |                  %p
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/cct7luyl.o: in function `connectToPrev':
fchaos.c:(.text+0xc6c): undefined reference to `findPrev'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:14: ../chaos] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/lagan-2.0-r3/work/lagan20/src'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_20190510-222116

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems)
  [3]   ruby26 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.34.1 *



emerge -qpvO sci-biology/lagan
[ebuild  N    ] sci-biology/lagan-2.0-r3
Comment 1 Toralf Förster gentoo-dev 2019-05-12 15:53:01 UTC
Created attachment 576220 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-05-12 15:53:04 UTC
Created attachment 576222 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2019-05-12 15:53:07 UTC
Created attachment 576224 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2019-05-12 15:53:10 UTC
Created attachment 576226 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2019-05-12 15:53:12 UTC
Created attachment 576228 [details]
sci-biology:lagan-2.0-r3:20190512-153834.log
Comment 6 Toralf Förster gentoo-dev 2019-05-12 15:53:15 UTC
Created attachment 576230 [details]
temp.tbz2
Comment 7 Larry the Git Cow gentoo-dev 2020-11-01 18:37:05 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=053ec438e912e15f1a98959c59d4f08903d31138

commit 053ec438e912e15f1a98959c59d4f08903d31138
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-11-01 18:36:21 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-11-01 18:36:21 +0000

    sci-biology/lagan: Port to EAPI 7
    
    * Fix building against GCC 10 / -fno-common
    * Fix building against C99 / -O0
    * Fix broken build system
    * Import patches from Debian
    
    Closes: https://bugs.gentoo.org/685736
    Closes: https://bugs.gentoo.org/688700
    Closes: https://bugs.gentoo.org/707404
    Package-Manager: Portage-3.0.8, Repoman-3.0.2
    Signed-off-by: David Seifert <soap@gentoo.org>

 .../lagan/files/lagan-2.0-C99-static-inline.patch  | 258 +++++++++++
 .../lagan/files/lagan-2.0-ambiguous-end.patch      |  49 +++
 .../files/lagan-2.0-conflicting-getline.patch      |  24 ++
 sci-biology/lagan/files/lagan-2.0-fix-c++14.patch  | 473 ---------------------
 sci-biology/lagan/files/lagan-2.0-gcc-10.patch     |  27 ++
 sci-biology/lagan/files/lagan-2.0-gcc-4.8.patch    |  25 ++
 sci-biology/lagan/files/lagan-2.0-gcc-9.patch      |  25 ++
 sci-biology/lagan/files/lagan-2.0-gcc4.3.patch     |  23 -
 ...an-2.0-flags.patch => lagan-2.0-makefile.patch} | 109 ++---
 .../files/lagan-2.0-qa-implicit-declarations.patch |  63 +--
 sci-biology/lagan/lagan-2.0-r3.ebuild              |  71 ----
 sci-biology/lagan/lagan-2.0-r4.ebuild              |  67 +++
 12 files changed, 550 insertions(+), 664 deletions(-)