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Bug 649864 - sci-chemistry/avogadro2-1.90.0 version bump
Summary: sci-chemistry/avogadro2-1.90.0 version bump
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
Keywords: EBUILD
: 640660 (view as bug list)
Depends on:
Blocks: 645030
  Show dependency tree
Reported: 2018-03-07 18:10 UTC by Giuseppe Marco Randazzo <zeld>
Modified: 2018-04-08 09:54 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

avogadro2-1.90.0.ebuild (avogadro2-1.90.0.ebuild,1.01 KB, text/plain)
2018-03-07 18:10 UTC, Giuseppe Marco Randazzo <zeld>

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Description Giuseppe Marco Randazzo <zeld> 2018-03-07 18:10:27 UTC
Created attachment 522890 [details]

Here the upgrade requesto of avogadro2 to version 1.90.0
Comment 1 Giuseppe Marco Randazzo <zeld> 2018-03-08 09:49:18 UTC
Solution to the possible problem after install related to Xorg, nvidia proprietary drivers and libGL.....

The problem....

Extension plugins dynamically found... 21
OBProcess::executeObabel: Running "obabel" "-L formats read"
OBProcess::executeObabel: Running "obabel" "-L formats write"
OBProcess::executeObabel: Running "obabel" "-L forcefields"
OBProcess::executeObabel: Running "obabel" "-V"
"obabel"  found:  "obabel: Open Babel 2.4.1 -- Feb 19 2018 -- 16:05:48"
Checking for generator scripts in "/usr/bin/../lib64/avogadro2/scripts/inputGenerators"
Checking for file format scripts in "/usr/bin/../lib64/avogadro2/scripts/formatScripts"
libGL error: No matching fbConfigs or visuals found
libGL error: failed to load driver: swrast
No XVisualInfo for format QSurfaceFormat(version 2.0, options QFlags<QSurfaceFormat::FormatOption>(), depthBufferSize 0, redBufferSize 1, greenBufferSize 1, blueBufferSize 1, alphaBufferSize 0, stencilBufferSize 0, samples 1, swapBehavior QSurfaceFormat::SwapBehavior(SingleBuffer), swapInterval -1, profile  QSurfaceFormat::OpenGLContextProfile(NoProfile))
Falling back to using screens root_visual.
Could not initialize GLX

The solution....

LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/lib64/opengl/nvidia/lib" avogadro2
Comment 2 Andreas Sturmlechner gentoo-dev 2018-04-07 21:35:55 UTC
*** Bug 640660 has been marked as a duplicate of this bug. ***
Comment 3 Larry the Git Cow gentoo-dev 2018-04-08 09:54:59 UTC
The bug has been closed via the following commit(s):

commit 903ccf1e86f6f4d80e671dc8a1af6ed92eb0519e
Author:     Andreas Sturmlechner <>
AuthorDate: 2018-04-07 22:20:56 +0000
Commit:     Andreas Sturmlechner <>
CommitDate: 2018-04-08 09:53:52 +0000

    sci-chemistry/avogadro2: Add 1.90.0_p20180211 snapshot
    Package-Manager: Portage-2.3.28, Repoman-2.3.9

 sci-chemistry/avogadro2/Manifest                   |  1 +
 .../avogadro2/avogadro2-1.90.0_p20180211.ebuild    | 59 ++++++++++++++++++++++
 2 files changed, 60 insertions(+)

Additionally, it has been referenced in the following commit(s):

commit 06e8750dfc20a9abf32d36b3794e5d97b16997f0
Author:     Andreas Sturmlechner <>
AuthorDate: 2018-04-07 22:24:09 +0000
Commit:     Andreas Sturmlechner <>
CommitDate: 2018-04-08 09:53:53 +0000

    sci-chemistry/avogadro2: Drop 0.9.0, fails to build
    Package-Manager: Portage-2.3.28, Repoman-2.3.9

 sci-chemistry/avogadro2/Manifest               |  1 -
 sci-chemistry/avogadro2/avogadro2-0.9.0.ebuild | 51 --------------------------
 2 files changed, 52 deletions(-)}