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Bug 649658 - dev-python/h5py-2.7.1: failed to reach any of the inventories
Summary: dev-python/h5py-2.7.1: failed to reach any of the inventories
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal with 1 vote (vote)
Assignee: Python Gentoo Team
Depends on:
Reported: 2018-03-05 16:06 UTC by Andrey Grozin
Modified: 2019-03-23 10:52 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Andrey Grozin gentoo-dev 2018-03-05 16:06:17 UTC
* python3_6: running distutils-r1_run_phase python_compile_all
make -j8 html 
sphinx-build -b html -d _build/doctrees  -W . _build/html
Running Sphinx v1.6.7
making output directory...
loading pickled environment... not yet created
loading intersphinx inventory from

Warning, treated as error:
failed to reach any of the inventories with the following issues:
make: *** [Makefile:53: html] Error 1

dns ~ # emerge --info '=dev-python/h5py-2.7.1::gentoo'
Portage 2.3.24 (python 3.6.4-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-7.3.0, glibc-2.26-r6, 4.14.2-gentoo x86_64)
                         System Settings
System uname: Linux-4.14.2-gentoo-x86_64-Intel-R-_Core-TM-_i7-3610QM_CPU_@_2.30GHz-with-gentoo-2.4.1
KiB Mem:     8073972 total,   4133956 free
KiB Swap:   10485756 total,  10485492 free
Timestamp of repository gentoo: Sun, 04 Mar 2018 19:45:01 +0000
Head commit of repository gentoo: 3ba79511485a56e36ed780cf0516224af40e654d
sh bash 4.4_p19
ld GNU ld (Gentoo 2.27 p1.0) 2.27
app-shells/bash:          4.4_p19::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.26.1-r2::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.4.6-r1::gentoo, 3.5.4-r1::gentoo, 3.6.4::gentoo
dev-util/cmake:           3.10.2::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.35.2::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.59-r7::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.12.6-r2::gentoo, 1.13.4-r2::gentoo, 1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16-r1::gentoo
sys-devel/binutils:       2.26.1::gentoo, 2.27::gentoo, 2.28-r2::gentoo, 2.28.1::gentoo, 2.29::gentoo, 2.29.1-r1::gentoo, 2.30::gentoo
sys-devel/gcc:            5.4.0-r4::gentoo, 6.4.0-r1::gentoo, 7.2.0-r1::gentoo, 7.3.0::gentoo
sys-devel/gcc-config:     1.9.1::gentoo
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1-r2::gentoo
sys-kernel/linux-headers: 4.15::gentoo (virtual/os-headers)
sys-libs/glibc:           2.26-r6::gentoo

    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://
    priority: -1000
    sync-rsync-verify-metamanifest: no

    location: /var/lib/layman/lisp
    masters: gentoo
    priority: 50

    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

    location: /usr/local/portage
    masters: gentoo
    priority: 60

ACCEPT_KEYWORDS="amd64 ~amd64"
CFLAGS="-O2 -march=native -pipe"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.1/ext-active/ /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=native -pipe"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="ru en"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
USE="X a52 aac acpi activities alsa amd64 bash-completion berkdb blas bluetooth boehm-gc branding browserplugin bzip2 cairo cdda cdr cli consolekit crypt css cups curl cxx dbus declarative dirac doc dri dvd emacs enca encode exif fam ffmpeg fftw flac fortran gd gdbm gif glamor gmp gpm gsl gtk iconv imagemagick jpeg kde kipi kpathsea kwallet lapack latex lcms ldap libnotify lzma mad mng modules mozilla mp3 mp4 mpeg multilib ncurses nls nptl nsplugin offensive ogg opengl openmp pam pango pcre pdf phonon plasma plotutils png policykit ppds python qml qt3support qt5 readline schroedinger sdl seccomp semantic-desktop speex spell ssl startup-notification svg tcl tcpd theora tiff tk truetype udev udisks umfpack unicode upower usb v4l2 vorbis widgets win32codecs wxwidgets x264 xattr xcb xcomposite xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="ru en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5 python3_6" RUBY_TARGETS="ruby23 ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"

dns ~ # emerge -pqv '=dev-python/h5py-2.7.1::gentoo'
[ebuild     U ] dev-python/h5py-2.7.1 [2.7.0] USE="doc -examples -mpi {-test}" PYTHON_TARGETS="python2_7 python3_5 python3_6 -python3_4"
Comment 1 Erik Quaeghebeur 2019-03-22 10:06:38 UTC
Also present for 2.9.0.

Is there a workaround? I was able to build this version previously despite this, but now, even with network access, it fails like this.
Comment 2 François Bissey 2019-03-22 10:54:27 UTC
One interesting solution that I have seen sage use is to package the inventory file in the source tarball instead of downloading at build time. Of course it doesn't make it fresh but it makes it from the same time as the package. I think it is annoying in the first place to be pointed at live documentation which may be different from what you installed.
Comment 3 Erik Quaeghebeur 2019-03-23 10:52:19 UTC
(In reply to Erik Quaeghebeur from comment #1)
> Is there a workaround?
Don't build the docs, obviously!

A straightforward, if imperfect solution would be to add

sed '/intersphinx/d' -i || die

to the python_compile_all-part of the ebuild (cf.