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Bug 638048 - sci-biology/arb-6.0.6 : arbdb.cxx:15:23: fatal error: rpc/types.h: No such file or directory
Summary: sci-biology/arb-6.0.6 : arbdb.cxx:15:23: fatal error: rpc/types.h: No such fi...
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Deadline: 2019-04-30
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard: ~arch only
Keywords: PMASKED
Depends on:
Blocks: glibc-rpc
  Show dependency tree
 
Reported: 2017-11-18 20:37 UTC by Toralf Förster
Modified: 2019-05-02 18:46 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,15.98 KB, text/plain)
2017-11-18 20:37 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,105.69 KB, text/plain)
2017-11-18 20:37 UTC, Toralf Förster
Details
environment (environment,47.03 KB, text/plain)
2017-11-18 20:37 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,12.10 KB, application/x-bzip)
2017-11-18 20:37 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,7.62 KB, application/x-bzip)
2017-11-18 20:37 UTC, Toralf Förster
Details
sci-biology:arb-6.0.6:20171118-202025.log (sci-biology:arb-6.0.6:20171118-202025.log,40.00 KB, text/plain)
2017-11-18 20:37 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,15.76 KB, application/x-bzip)
2017-11-18 20:37 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2017-11-18 20:37:13 UTC
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arbdb.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
arbdb.cxx:15:23: fatal error: rpc/types.h: No such file or directory
compilation terminated.
make[2]: *** [Makefile:74: arbdb.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/ARBDB'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 13.0-desktop_20171113-203456

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-6.4.0 *

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   pypy3 (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.6.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpv sci-biology/arb
[ebuild  N    ] sci-biology/arb-6.0.6  USE="opengl -debug {-test}"
Comment 1 Toralf Förster gentoo-dev 2017-11-18 20:37:15 UTC
Created attachment 504666 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-11-18 20:37:18 UTC
Created attachment 504668 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2017-11-18 20:37:21 UTC
Created attachment 504670 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2017-11-18 20:37:24 UTC
Created attachment 504672 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2017-11-18 20:37:28 UTC
Created attachment 504674 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2017-11-18 20:37:31 UTC
Created attachment 504676 [details]
sci-biology:arb-6.0.6:20171118-202025.log
Comment 7 Toralf Förster gentoo-dev 2017-11-18 20:37:34 UTC
Created attachment 504678 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2019-03-31 11:00:34 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=10920fe45676000347486aac02208a47809c4c3e

commit 10920fe45676000347486aac02208a47809c4c3e
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2019-03-31 10:59:12 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2019-03-31 11:00:29 +0000

    package.mask: Last rite sci-biology/arb
    
    Bug: https://bugs.gentoo.org/638048
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 profiles/package.mask | 7 +++++++
 1 file changed, 7 insertions(+)
Comment 9 Mikle Kolyada archtester Gentoo Infrastructure gentoo-dev Security 2019-05-02 18:46:28 UTC
Gone.