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Bug 631298 - sci-libs/scipy-0.19.1 - .../temp/tmpYpFWOg/source.c:1:19: fatal error: cblas.h: No such file or directory
Summary: sci-libs/scipy-0.19.1 - .../temp/tmpYpFWOg/source.c:1:19: fatal error: cblas....
Status: RESOLVED DUPLICATE of bug 614464
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-09-18 03:15 UTC by Anton Kochkov
Modified: 2017-09-22 12:42 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
scipy-build.log.gz (scipy-build.log.gz,96.21 KB, application/gzip)
2017-09-18 03:15 UTC, Anton Kochkov
Details

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Description Anton Kochkov 2017-09-18 03:15:39 UTC
Created attachment 495146 [details]
scipy-build.log.gz

error: Command "/usr/bin/gfortran -Wall -g -Wl,-O1 -Wl,--as-needed -shared /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/src.linux-x86_64-3.6/src.linux-x86_64-3.6/scipy/linalg/_fblasmodule.o /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/src.linux-x86_64-3.6/src.linux-x86_64-3.6/scipy/linalg/fortranobject.o /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/scipy/_build_utils/src/wrap_dummy_g77_abi.o /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/scipy/_build_utils/src/wrap_dummy_accelerate.o /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/src.linux-x86_64-3.6/src.linux-x86_64-3.6/scipy/linalg/_fblas-f2pywrappers.o -L/usr/lib64 -L/usr/lib64 -L/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/temp.linux-x86_64-3.6 -lrefblas -lreflapack -lgslcblas -lrefblas -lpython3.6m -lgfortran -o /var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6/build/lib/scipy/linalg/_fblas.cpython-36m-x86_64-linux-gnu.so" failed with exit status 1
 [31;01m*[0m ERROR: sci-libs/scipy-0.19.1::gentoo failed (compile phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  115:  Called src_compile
 [31;01m*[0m   environment, line 4323:  Called distutils-r1_src_compile
 [31;01m*[0m   environment, line 1290:  Called _distutils-r1_run_foreach_impl 'python_compile'
 [31;01m*[0m   environment, line  372:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 3747:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 2819:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line 2817:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile'
 [31;01m*[0m   environment, line  853:  Called distutils-r1_run_phase 'python_compile'
 [31;01m*[0m   environment, line 1283:  Called python_compile
 [31;01m*[0m   environment, line 3335:  Called distutils-r1_python_compile '-j' '5' 'config_fc' '--noopt' '--noarch'
 [31;01m*[0m   environment, line 1158:  Called esetup.py 'build' '-j' '5' 'config_fc' '--noopt' '--noarch'
 [31;01m*[0m   environment, line 1843:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${@}" || die "${die_args[@]}";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/scipy-0.19.1::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/scipy-0.19.1::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.19.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-0.19.1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1-python3_6'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/scipy-0.19.1/work/scipy-0.19.1'
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2017-09-19 12:47:40 UTC
/usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py:644: UserWarning: Specified path /usr/local/include/python3.6m is invalid.

What is this?
Comment 2 Anton Kochkov 2017-09-20 10:03:56 UTC
(In reply to Jeroen Roovers from comment #1)
> /usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py:644:
> UserWarning: Specified path /usr/local/include/python3.6m is invalid.
> 
> What is this?

Have no idea, updated world (except a few packages), rebuilt python3.6, but still the same error.
Comment 3 François Bissey 2017-09-20 10:07:42 UTC
Duplicate of https://bugs.gentoo.org/show_bug.cgi?id=614464 I am sure. Try building serially.
Comment 4 Anton Kochkov 2017-09-22 06:30:43 UTC
MAKEOPTS=-j1 exactly helped
Comment 5 Benda Xu gentoo-dev 2017-09-22 12:42:00 UTC

*** This bug has been marked as a duplicate of bug 614464 ***