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Bug 606960 - sci-biology/vaal-46233-r2: please stabilise
Summary: sci-biology/vaal-46233-r2: please stabilise
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Stabilization (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on:
Blocks: gcc-5-stable
  Show dependency tree
 
Reported: 2017-01-23 20:31 UTC by Toralf Förster
Modified: 2017-01-24 09:06 UTC (History)
0 users

See Also:
Package list:
=sci-biology/vaal-46233-r2
Runtime testing required: No
stable-bot: sanity-check+


Attachments
emerge-info.txt (emerge-info.txt,5.64 KB, text/plain)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details
config.log (config.log,44.96 KB, text/plain)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details
emerge-history.txt (emerge-history.txt,97.92 KB, text/plain)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details
environment (environment,104.80 KB, text/plain)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details
etc.portage.tbz2 (etc.portage.tbz2,15.53 KB, application/x-bzip)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details
sci-biology:vaal-46233:20170123-190519.log (sci-biology:vaal-46233:20170123-190519.log,128.61 KB, text/plain)
2017-01-23 20:32 UTC, Toralf Förster
no flags Details

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Description Toralf Förster gentoo-dev 2017-01-23 20:31:57 UTC
                 from /var/tmp/portage/sci-biology/vaal-46233/work/vaal-46233/src/PrintAlignment.h:12,
                 from /var/tmp/portage/sci-biology/vaal-46233/work/vaal-46233/src/pairwise_aligners/Mutmer.cc:10:
/var/tmp/portage/sci-biology/vaal-46233/work/vaal-46233/src/PackAlign.h:626:23: error: ‘a’ was not declared in this scope
 int Bandwidth( align& a );
                       ^
/var/tmp/portage/sci-biology/vaal-46233/work/vaal-46233/src/PackAlign.h:628:31: error: reference to ‘align’ is ambiguous

  -----------------------------------------------------------------

  This is an stable amd64 chroot image (named desktop-stable_20170121-152726) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *
llvm-config --version:
3.7.1
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm
Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby21 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.2.0 [icedtea-bin-8]
  -----------------------------------------------------------------
Comment 1 Toralf Förster gentoo-dev 2017-01-23 20:32:00 UTC
Created attachment 461106 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-01-23 20:32:03 UTC
Created attachment 461108 [details]
config.log
Comment 3 Toralf Förster gentoo-dev 2017-01-23 20:32:06 UTC
Created attachment 461110 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2017-01-23 20:32:09 UTC
Created attachment 461112 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2017-01-23 20:32:12 UTC
Created attachment 461114 [details]
etc.portage.tbz2
Comment 6 Toralf Förster gentoo-dev 2017-01-23 20:32:15 UTC
Created attachment 461116 [details]
sci-biology:vaal-46233:20170123-190519.log
Comment 7 David Seifert gentoo-dev 2017-01-23 22:05:27 UTC
@ATs, please stabilise
Comment 8 Agostino Sarubbo gentoo-dev 2017-01-24 09:06:35 UTC
amd64 stable. Closing.