Created attachment 450828 [details] build.log Hi, on Gentoo::RAP installation the compile step fails. I wonder why configure has found MYSQL and failed to pass the paths down to Makefile's. The "-I/usr/include/mysql" is clearly wrong and should read "-I${EPREFIX}/usr/include/mysql". checking whether to enable MathProg ODBC support... no checking whether to enable MathProg MySQL support... yes checking that generated files are newer than configure... done configure: creating ./config.status ... libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I. -I./bflib -I./cglib -I./env -I./minisat -I./misc -I./proxy -I./simplex -I/usr/include/mysql -O2 -pipe -O2 -pipe -march=native -c glpsql.c -fPIC -DPIC -o .libs/libglpk_la-glpsql.o glpsql.c:1121:19: fatal error: mysql.h: No such file or directory compilation terminated. $ mysql_config Usage: /scratch/mmokrejs/gentoo_rap/usr/bin/mysql_config [OPTIONS] Options: --cflags [-I/scratch/mmokrejs/gentoo_rap/usr/include/mysql -I/scratch/mmokrejs/gentoo_rap/usr/include/mysql/.. ] --include [-I/scratch/mmokrejs/gentoo_rap/usr/include/mysql -I/scratch/mmokrejs/gentoo_rap/usr/include/mysql/..] --libs [-L/scratch/mmokrejs/gentoo_rap/usr/lib64 -lmysqlclient -lpthread -lz -lm -ldl -lssl -lcrypto] --libs_r [-L/scratch/mmokrejs/gentoo_rap/usr/lib64 -lmysqlclient -lpthread -lz -lm -ldl -lssl -lcrypto] --plugindir [/scratch/mmokrejs/gentoo_rap/usr/lib64/mysql/plugin] --socket [/scratch/mmokrejs/gentoo_rap/var/run/mysqld/mysqld.sock] --port [0] --version [10.1.17] --libmysqld-libs [-L/scratch/mmokrejs/gentoo_rap/usr/lib64/mysql -lmysqld] --variable=VAR VAR is one of: pkgincludedir [/scratch/mmokrejs/gentoo_rap/usr/include/mysql] pkglibdir [/scratch/mmokrejs/gentoo_rap/usr/lib64] plugindir [/scratch/mmokrejs/gentoo_rap/usr/lib64/mysql/plugin] $ $ emerge --info Portage 2.3.2 (python 2.7.12-final-0, prefix/linux-standalone/amd64, gcc-5.4.0, glibc-2.23-r2, 2.6.32-642.3.1.el6.Bull.98.x86_64 x86_64) ================================================================= System uname: Linux-2.6.32-642.3.1.el6.Bull.98.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2670_0_@_2.60GHz-with-redhat-6.4-Santiago KiB Mem: 131942620 total, 29208188 free KiB Swap: 65536128 total, 65140536 free Timestamp of repository gentoo: Thu, 20 Oct 2016 08:30:01 +0000 sh bash 4.4-r1 ld GNU ld (Gentoo 2.26) 2.26.20160125 app-shells/bash: 4.4-r1::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.4::gentoo dev-util/cmake: 3.6.2::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.4::gentoo dev-util/cmake: 3.6.2::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.69-r2::gentoo sys-devel/automake: 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.26::rap, 2.26.1::gentoo sys-devel/gcc: 4.1.2::gentoo, 4.2.4-r1::gentoo, 4.3.6-r1::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.7.4::gentoo, 4.9.4::gentoo, 5.4.0::gentoo sys-devel/gcc-config: 1.8_p20160608::rap sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::rap Repositories: gentoo location: /scratch/mmokrejs/gentoo_rap/usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 eclass-overrides: rap layman location: /scratch/mmokrejs/gentoo_rap/var/lib/layman masters: gentoo priority: 0 eclass-overrides: rap rap location: /scratch/mmokrejs/gentoo_rap/usr/portage-stage sync-type: git sync-uri: https://anongit.gentoo.org/git/proj/android.git masters: gentoo eclass-overrides: rap haskell location: /scratch/mmokrejs/gentoo_rap/var/lib/layman/haskell masters: gentoo priority: 50 eclass-overrides: rap science location: /scratch/mmokrejs/gentoo_rap/var/lib/layman/science masters: gentoo priority: 50 eclass-overrides: rap ACCEPT_KEYWORDS="amd64 ~amd64 ~amd64-linux" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x Intel-SDP OPERA-2014" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native" DISTDIR="/scratch/mmokrejs/gentoo_rap/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news noclean nostrip parallel-fetch preserve-libs protect-owned sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged userfetch userpriv usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j8" PKGDIR="/scratch/mmokrejs/gentoo_rap/usr/portage/packages" PORTAGE_CONFIGROOT="/scratch/mmokrejs/gentoo_rap/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/scratch/mmokrejs/gentoo_rap/var/tmp" USE="X amd64 apache apache2 avx avx2 berkdb bindist boost bzip2 cairo cgi cli coin consolekit cracklib crypt cryptlib cxx dbus device-mapper dhcp dri emboss encode fax fbcon ffmpeg fontconfig fortran gbm gd gdbm gimp glpk gnutls gtk hal hwdb iconv imaging innodb java javascript jce jpeg jpg js jscript keymap ladspa lapack lcms libnotify lm_sensors mad mmx mmxext modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nscd openmp pcre pdf perl php png policykit polkit ppds pppd prefix python qt3support readline resolvconf seccomp server session slideshow sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="en_US en en_GB cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US en_GB en cs" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
configure.ac has a hardcoded "-I/usr/lib/mysql"...
Right, here is the configure: 12311 { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether to enable MathProg MySQL support" >&5 12312 $as_echo_n "checking whether to enable MathProg MySQL support... " >&6; } 12313 if test "$enable_mysql" = "yes"; then 12314 if test "$enable_dl" = "no"; then 12315 as_fn_error $? "--enable-mysql requires --enable-dl" "$LINENO" 5 12316 fi 12317 { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 12318 $as_echo "yes" >&6; } 12319 CPPFLAGS="-I/usr/include/mysql $CPPFLAGS" and here is the configure.ac: 137 AC_MSG_CHECKING([whether to enable MathProg MySQL support]) 138 if test "$enable_mysql" = "yes"; then 139 if test "$enable_dl" = "no"; then 140 AC_MSG_ERROR([--enable-mysql requires --enable-dl]) 141 fi 142 AC_MSG_RESULT([yes]) 143 CPPFLAGS="-I/usr/include/mysql $CPPFLAGS" 144 AC_DEFINE_UNQUOTED([MYSQL_DLNAME], ["$LIBMYSQL"], [N/A]) 145 else 146 AC_MSG_RESULT([no]) 147 fi
This works for me: sed -e 's#CPPFLAGS="-I/usr/include/mysql#CPPFLAGS="-I'"${EPREFIX}"'/usr/include/mysql#' -i configure.ac || die
Reopen if problem still persists.
Yes, still happens with even with current sci-mathematics/glpk-4.63::gentoo . $ emerge --info '=sci-mathematics/glpk-4.63::gentoo' Portage 2.3.30 (python 2.7.14-final-0, default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+, gcc-7.3.0, glibc-2.25-r11, 2.6.32-696.20.1.el6.x86_64 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-2.6.32-696.20.1.el6.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2695_v3_@_2.30GHz-with-centos-6.9-Final KiB Mem: 132048928 total, 407120 free KiB Swap: 2097148 total, 1954736 free Timestamp of repository gentoo: Thu, 19 Apr 2018 22:00:01 +0000 Head commit of repository gentoo: 584d70127d3eb4c708a7c1517aec8d32b4c0edee sh bash 4.4_p19 ld GNU ld (Gentoo 2.30 p1) 2.30.0 app-shells/bash: 4.4_p19::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.1-r2::gentoo dev-lang/python: 2.7.14-r1::gentoo, 3.4.6::gentoo, 3.5.5::gentoo, 3.6.4::gentoo dev-util/cmake: 3.11.1::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.4.1-r2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.14.1-r1::gentoo, 1.15.1-r1::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.29.1-r1::gentoo, 2.30-r1::gentoo sys-devel/gcc: 3.4.6-r2::gentoo, 4.1.2::gentoo, 4.2.4-r1::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.3::gentoo, 4.9.4::gentoo, 5.4.0-r4::gentoo, 6.3.0::gentoo, 7.1.0-r1::gentoo, 7.2.0-r1::gentoo, 7.3.0-r1::gentoo sys-devel/gcc-config: 1.9.1::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r3::gentoo sys-kernel/linux-headers: 4.16-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.25-r11::gentoo Repositories: gentoo location: /apps/gentoo/usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 local location: /apps/gentoo/usr/local/portage masters: gentoo priority: 0 haskell location: /apps/gentoo/var/lib/layman/haskell masters: gentoo priority: 50 science location: /apps/gentoo/var/lib/layman/science masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x Intel-SDP OPERA-2014" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf" CONFIG_PROTECT_MASK="/apps/gentoo/etc/gentoo-release /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize" DISTDIR="/apps/gentoo/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync multilib-strict news nostrip parallel-fetch preserve-libs protect-owned sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,--as-needed" LINGUAS="en_US en_GB en cs" MAKEOPTS="-j4" PKGDIR="/apps/gentoo/usr/portage/packages" PORTAGE_CONFIGROOT="/apps/gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/apps/gentoo/var/tmp" USE="X alsa amd64 apache apache2 avx avx2 berkdb boost bzip2 cairo cgi cli coin cracklib crypt cryptlib cxx dbus device-mapper dhcp dri emboss encode fax fbcon ffmpeg fontconfig fortran gbm gd gdbm gimp glpk gnutls gtk hal hwdb iconv imaging innodb ithreads java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack lcms libnotify lm_sensors mad mmx modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nscd objc openmp openssl pcre pdf perl php png policykit polkit postscript ppds pppd prefix python qt3support readline resolvconf seccomp server session slideshow sndfile sparsehash sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 static-libs suexec svg syslog tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="avx avx2 fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, ENV_UNSET, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-mathematics/glpk-4.63::gentoo was built with the following: USE="mysql (prefix) -doc -examples -gmp -odbc -static-libs" LDFLAGS="-Wl,-O1 -Wl,--as-needed"
Created attachment 528068 [details] build.log for glpk-4.63
I tried to do a pull request in the past, btw: commit 97dfa11f0790cd327ed297d2ad450c14015e98ec (HEAD -> glpk_EPREFIX, origin/glpk_EPREFIX) Author: Martin Mokrejš <mmokrejs@gmail.com> Date: Tue Feb 20 17:00:38 2018 +0100 sci-matchematics/glpk: respect EPREFIX Prepend EPREFIX in front of hardcoded include path. All modified ebuilds emerged successfully on a Gentoo::RAP host. Bug: https://bugs.gentoo.org/597620
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=424ab08f0e139226daea9ac2834555b65544f84f commit 424ab08f0e139226daea9ac2834555b65544f84f Author: Martin Mokrejs <mmokrejs@gmail.com> AuthorDate: 2018-04-21 08:12:23 +0000 Commit: Tony Vroon <chainsaw@gentoo.org> CommitDate: 2018-07-13 10:43:28 +0000 sci-matchematics/glpk: respect EPREFIX Prepend EPREFIX in front of hardcoded include path. All modified ebuilds emerged successfully on a Gentoo::RAP host. Bug: https://bugs.gentoo.org/597620 Closes: https://github.com/gentoo/gentoo/pull/7238 sci-mathematics/glpk/glpk-4.63.ebuild | 1 + 1 file changed, 1 insertion(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=20a34c28e3afae7c20221d6fb76ae83d119c1375 commit 20a34c28e3afae7c20221d6fb76ae83d119c1375 Author: Michael Orlitzky <mjo@gentoo.org> AuthorDate: 2020-03-06 21:50:06 +0000 Commit: Michael Orlitzky <mjo@gentoo.org> CommitDate: 2020-03-07 02:13:24 +0000 sci-mathematics/glpk: new version 4.65. This new upstream version fixes a few minor ebuild issues: * I've attempted to fix the MySQL include location in a more standard way, by using mysql_config (bug 597620). Another solution was already present in v4.63, so I've marked this bug as resolved. * The virtual/mysql dependency was replaced, per bug 666060. This will be completely resolved when v4.65 goes stable and v4.63 is removed. We also include a new patch, from upstream, to quiet some overly-verbose output. The patch to debundle the system libraries was forward-ported to the new version thanks to François Bissey, who maintained an ebuild for v4.65 in the sage-on-gentoo overlay until now. Bug: https://bugs.gentoo.org/666060 Closes: https://bugs.gentoo.org/597620 Closes: https://bugs.gentoo.org/711648 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> sci-mathematics/glpk/Manifest | 1 + .../files/glpk-4.65-debundle-system-libs.patch | 91 ++++++++++++++++++++++ .../files/glpk-4.65-fix-mysql-include-prefix.patch | 47 +++++++++++ .../glpk/files/glpk-4.65-longstep_verbosity.patch | 23 ++++++ sci-mathematics/glpk/glpk-4.65.ebuild | 69 ++++++++++++++++ 5 files changed, 231 insertions(+)
