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Bug 596122 - sci-mathematics/fricas-1.3.0 : configure: error: Unable to determine Lisp flavor
Summary: sci-mathematics/fricas-1.3.0 : configure: error: Unable to determine Lisp flavor
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Andrey Grozin
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-04 08:24 UTC by Toralf Förster
Modified: 2017-01-22 17:37 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
config.log (config.log,11.12 KB, text/plain)
2016-10-04 08:24 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,254.41 KB, text/plain)
2016-10-04 08:24 UTC, Toralf Förster
Details
environment (environment,46.12 KB, text/plain)
2016-10-04 08:24 UTC, Toralf Förster
Details
sci-mathematics:fricas-1.3.0:20161003-214156.log (sci-mathematics:fricas-1.3.0:20161003-214156.log,5.09 KB, text/plain)
2016-10-04 08:25 UTC, Toralf Förster
Details
asdf.log (asdf.lisp,559.75 KB, text/plain)
2016-10-05 13:19 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,6.00 KB, text/plain)
2017-01-22 17:36 UTC, Toralf Förster
Details
config.log (config.log,11.20 KB, text/plain)
2017-01-22 17:36 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,261.66 KB, text/plain)
2017-01-22 17:37 UTC, Toralf Förster
Details
environment (environment,46.09 KB, text/plain)
2017-01-22 17:37 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,18.66 KB, application/x-bzip)
2017-01-22 17:37 UTC, Toralf Förster
Details
sci-mathematics:fricas-1.3.0-r1:20170122-172008.log (sci-mathematics:fricas-1.3.0-r1:20170122-172008.log,5.13 KB, text/plain)
2017-01-22 17:37 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-10-04 08:24:48 UTC
0] 
* sed: can't read config_cl.out: No such file or directory
configure: error: Unable to determine Lisp flavor

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-mathematics/fricas-1.3.0/work/fricas-1.3.0/config.log


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-13.0-systemd-unstable_20160928-214401) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags ...

  ... in make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist ssp apache clang curl drmkms -dvd egl emacs fitz -fluidsynth ftp gles2 graphtft gstreamer gtk3 gtkstyle gui haptic havege imap infinality javascript javaxml kerberos latex ldap logrotate mad modplug mp4 mpeg mpeg3 multimedia nls nss obj objc opencv pam -pcre16 pdo plotutils png -pulseaudio pwquality qt3support rdoc sasl scripts -semantic-desktop smime -snmp spice sqlite ssl sslv3 system-sqlite tcpd threads -tools tracepath utils uxa wayland webkit xcb xetex xkb xml xslt zip zlib"

  ... in /etc/portage/package.use/*:
  mail-mta/ssmtp      ssl mta
  net-misc/wget       ssl
  app-crypt/pinentry  -qt4
  app-editors/emacs   -dbus -svg -ssl -gtk -gtk3
  app-text/xmlto      -latex
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-lang/python     threads
  dev-qt/qtgui        egl eglfs
  net-nds/openldap    -sasl
  dev-util/cmake      -qt4 -qt5
  dev-vcs/git         -perl
  media-libs/mesa     -vaapi
  sys-apps/kmod       tools

  entries in /etc/portage/package.unmask/*:
  ~dev-libs/boost-1.62.0
  ~dev-util/boost-build-1.62.0
  ~sys-apps/sandbox-2.11
  sys-devel/gcc:6.2.0
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-6.2.0 *
llvm-config --version:
3.8.1

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   pypy3 (fallback)
  [4]   pypy (fallback)

  -----------------------------------------------------------------

Portage 2.3.1 (python 3.4.5-final-0, default/linux/amd64/13.0/systemd, gcc-6.2.0, glibc-2.23-r2, 4.7.6-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.6-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.3
KiB Mem:    65285480 total,    877512 free
KiB Swap:   67108860 total,  67106488 free
Timestamp of repository gentoo: Mon, 03 Oct 2016 19:11:24 +0000
sh bash 4.4
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.4::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.22.1::gentoo
sys-apps/sandbox:         2.11-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo, 2.26.1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 6.2.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/omega.conf /usr/lib64/fax /usr/share/config /usr/share/gnupg/qualified.txt /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/angband/gamedata/ /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 apache berkdb bzip2 clang cli cracklib crypt curl cxx dri drmkms egl emacs fitz fortran ftp gdbm gles2 graphtft gstreamer gtk3 gtkstyle gui haptic havege iconv imap infinality ipv6 javascript javaxml kerberos latex ldap logrotate mad mmx mmxext modplug modules mp4 mpeg mpeg3 multilib multimedia ncurses nls nptl nss obj objc opencv openmp pam pax_kernel pcre pdo plotutils png pwquality qt3support rdoc readline sasl scripts seccomp session smime spice sqlite sse sse2 ssl sslv3 ssp system-sqlite systemd tcpd threads tracepath udev unicode utils uxa wayland webkit xattr xcb xetex xkb xml xslt xtpax zip zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="es-ES et hy kok lt mk sw-TZ vi" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-10-04 08:24:51 UTC
Created attachment 449098 [details]
config.log
Comment 2 Toralf Förster gentoo-dev 2016-10-04 08:24:54 UTC
Created attachment 449100 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2016-10-04 08:24:57 UTC
Created attachment 449102 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2016-10-04 08:25:01 UTC
Created attachment 449104 [details]
sci-mathematics:fricas-1.3.0:20161003-214156.log
Comment 5 Andrey Grozin gentoo-dev 2016-10-04 11:36:41 UTC
What version of dev-lisp/asdf do you have? dev-lisp/sbcl-1.3.9 (which you use to compile fricas) requires >=asdf-3.1. I have asdf-1.3.5, the latest unmasked version in the tree. It owns the file /etc/common-lisp/gentoo-init.lisp, which (on line 8) requires to load /usr/share/common-lisp/source/asdf/build/asdf.lisp (*not* /usr/share/common-lisp/source/asdf/asdf.lisp as in your log file). /usr/share/common-lisp/source/asdf/build/asdf.lisp exists, and is owned by the same asdf-1.3.5.

If you use some other version of asdf, the content of its file /etc/common-lisp/gentoo-init.lisp should agree with the position of asdf.lisp. If they don't agree, this version of asdf is broken. On my system I see that asdf-1.3.5 is self-consistent in this respect.
Comment 6 Toralf Förster gentoo-dev 2016-10-04 15:50:56 UTC
(In reply to Andrey Grozin from comment #5)
Fri Sep 30 11:29:02 2016 >>> dev-lisp/asdf-3.1.5
plshave a look at the attached emerge history for more info
Comment 7 Andrey Grozin gentoo-dev 2016-10-05 08:23:24 UTC
(In reply to Toralf Förster from comment #6)
> (In reply to Andrey Grozin from comment #5)
> Fri Sep 30 11:29:02 2016 >>> dev-lisp/asdf-3.1.5
Then your file /etc/common-lisp/gentoo-init.lisp must be corrupted. This file is installed by dev-lisp/asdf-3.1.5, and in line 8 it says
"/usr/share/common-lisp/source/asdf/build/asdf.lisp". From your log file we see that sbcl reads /etc/common-lisp/gentoo-init.lisp and fails to load "/usr/share/common-lisp/source/asdf/asdf.lisp". Of course, there is no such file: asdf-3.1.5 installs this file to "/usr/share/common-lisp/source/asdf/build/asdf.lisp".
Comment 8 Toralf Förster gentoo-dev 2016-10-05 13:19:58 UTC
Created attachment 449226 [details]
asdf.log

tinderbox@mr-fox ~ $ ls -l amd64-13.0-systemd-unstable_20160928-214401//usr/share/common-lisp/source/asdf/build/asdf.lisp
-rw-r--r-- 1 root root 573189 Sep 30 11:28 amd64-13.0-systemd-unstable_20160928-214401//usr/share/common-lisp/source/asdf/build/asdf.lisp
Comment 9 Andrey Grozin gentoo-dev 2016-10-06 02:13:08 UTC
I suppose that after installing asdf-3.1.5 you forgot to run etc-update. As a result, your /etc/common-lisp/gentoo-init.lisp is from an old version of asdf (and contains "/usr/share/common-lisp/source/asdf/asdf.lisp" which is now wrong. And the correct file is in a ._ in /etc/common-lisp/ (with the correct path "/usr/share/common-lisp/source/asdf/build/asdf.lisp").
Please check if there are any ._* files in /etc/common-lisp/. Also please post the content of your /etc/common-lisp/gentoo-init.lisp.
Comment 10 Toralf Förster gentoo-dev 2016-10-06 08:32:04 UTC
well, the gtk+ at that tinderbox image was borken too, so I kicked it off
Comment 11 Toralf Förster gentoo-dev 2017-01-22 17:36:52 UTC
happened again here, where the image seems to be ok, or ?
Comment 12 Toralf Förster gentoo-dev 2017-01-22 17:36:55 UTC
Created attachment 460968 [details]
emerge-info.txt
Comment 13 Toralf Förster gentoo-dev 2017-01-22 17:36:58 UTC
Created attachment 460970 [details]
config.log
Comment 14 Toralf Förster gentoo-dev 2017-01-22 17:37:01 UTC
Created attachment 460972 [details]
emerge-history.txt
Comment 15 Toralf Förster gentoo-dev 2017-01-22 17:37:04 UTC
Created attachment 460974 [details]
environment
Comment 16 Toralf Förster gentoo-dev 2017-01-22 17:37:07 UTC
Created attachment 460976 [details]
etc.portage.tbz2
Comment 17 Toralf Förster gentoo-dev 2017-01-22 17:37:10 UTC
Created attachment 460978 [details]
sci-mathematics:fricas-1.3.0-r1:20170122-172008.log