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Bug 595018 - dev-lang/julia-0.5.0 segvs at build
Summary: dev-lang/julia-0.5.0 segvs at build
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Patrick Lauer
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-09-24 12:14 UTC by Michał Górny
Modified: 2016-09-25 07:05 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,281.51 KB, text/x-log)
2016-09-24 12:14 UTC, Michał Górny
Details

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Description Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2016-09-24 12:14:48 UTC
Created attachment 447750 [details]
build.log

I'm trying to test which LLVM versions julia supports but can't get any conclusive results. With 3.7, it fails to compile with some API incompatibility. With 3.8+ it compiles but then segfaults and throws a lot of errors while building modules.

linalg/linalg.jl^M

signal (11): Segmentation fault
while loading linalg/blas.jl, in expression starting on line 79
unknown function (ip: 0x7f601a44171a)
unknown function (ip: 0x7f601a441729)


Also, why does it output CRLF?

Deps:



Portage 2.3.1 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.20-r2, 4.7.4-gentoo x86_64)
=================================================================
System uname: Linux-4.7.4-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5630_@_2.53GHz-with-gentoo-2.2
KiB Mem:    49450316 total,   9890080 free
KiB Swap:    1048572 total,   1036148 free
Timestamp of repository gentoo: Sat, 24 Sep 2016 07:49:52 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p33-r2::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.3.5-r2::gentoo, 3.4.3-r1::gentoo
dev-util/cmake:           3.6.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.17::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.8.4::gentoo, 4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

mgorny
    location: /var/db/repos/mgorny
    masters: gentoo

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=native"
DISTDIR="/var/cache/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs binpkg-multi-instance buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j16"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Matthias Maier gentoo-dev 2016-09-24 22:08:41 UTC
I have updated blas in ::gentoo. This should resolve the problem with 3.8+.



commit 8a5e6558802794a78eec6c23b6d4912343c3ead3
Author: Matthias Maier <tamiko@gentoo.org>
Date:   Sat Sep 24 12:06:23 2016 -0500

    dev-lang/julia: drop old versions 0.4.3, 0.4.6
    
    Package-Manager: portage-2.2.28

commit d2b99c16c91fc0133f93ad932a6b4419ae602380
Author: Matthias Maier <tamiko@gentoo.org>
Date:   Sat Sep 24 12:05:34 2016 -0500

    dev-lang/julia: update blas dependency
    
    Package-Manager: portage-2.2.28

commit 3f82ac80a877cd50f3b9274b8d548898e8981097
Author: Matthias Maier <tamiko@gentoo.org>
Date:   Sat Sep 24 11:58:08 2016 -0500

    virtual/blas: add version 3.6 that requires blas-reference of at least 20151113
    
    Package-Manager: portage-2.2.28

commit fe1e2971466edea7c748fa927b3db28a9c6b6785
Author: Matthias Maier <tamiko@gentoo.org>
Date:   Sat Sep 24 16:01:39 2016 -0500

    sci-libs/blas-reference: version bump to 20151113 (upstream version 3.6.0)
    
    Package-Manager: portage-2.2.28