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Bug 592414 - games-board/sirius-0.8.0-r1 : /.../ld: gnome-canvas-pimage.o: undefined reference to symbol 'sqrt@@GLIBC_2.2.5'
Summary: games-board/sirius-0.8.0-r1 : /.../ld: gnome-canvas-pimage.o: undefined refer...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Austin English (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: gcc-5
  Show dependency tree
 
Reported: 2016-08-30 07:48 UTC by Toralf Förster
Modified: 2016-12-12 09:13 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-history.txt (emerge-history.txt,340.51 KB, text/plain)
2016-08-30 07:49 UTC, Toralf Förster
Details
environment (environment,103.57 KB, text/plain)
2016-08-30 07:49 UTC, Toralf Förster
Details
games-board:sirius-0.8.0-r1:20160830-050523.log (games-board:sirius-0.8.0-r1:20160830-050523.log,24.87 KB, text/plain)
2016-08-30 07:49 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,7.93 KB, text/plain)
2016-08-31 12:07 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,120.53 KB, text/plain)
2016-08-31 12:07 UTC, Toralf Förster
Details
environment (environment,101.79 KB, text/plain)
2016-08-31 12:07 UTC, Toralf Förster
Details
games-board:sirius-0.8.0-r1:20160831-120239.log (games-board:sirius-0.8.0-r1:20160831-120239.log,24.87 KB, text/plain)
2016-08-31 12:07 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2016-08-30 07:48:57 UTC
/bin/sh ../libtool  --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -march=native -O2 -pipe -Wall  -Wl,-O1 -Wl,--as-needed -o sirius sirius.o board.o book.o evaluation.o gnome-canvas-pimage.o hashtable.o search.o timer.o -lgnomeui-2 -lSM -lICE -lbonoboui-2 -lgnome-2 -lpopt -lbonobo-2 -lbonobo-activation -lORBit-2 -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -
libtool: link: x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe -Wall -Wl,-O1 -o sirius sirius.o board.o book.o evaluation.o gnome-canvas-pimage.o hashtable.o search.o timer.o -pthread -pthread  -Wl,--as-needed -lgnomeui-2 -lSM -lICE -lbonoboui-2 -lgnome-2 -lpopt -lbonobo-2 -lbonobo-activation -lORBit-2 -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgi
/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/../../../../x86_64-pc-linux-gnu/bin/ld: gnome-canvas-pimage.o: undefined reference to symbol 'sqrt@@GLIBC_2.2.5'
/lib64/libm.so.6: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:429: sirius] Error 1


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-gnome-systemd-unstable_20160823-001542) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------
  USE flags defined in ...

  ... make.conf:
USE="  pax_kernel xtpax -cdinstall -oci8 -bindist btrfs consolekit custom-cflags drmkms dvd ecc emacs extraengine -fluidsynth -fortran gcj gnome-keyring gtk gtk2 gtk3 gzip imlib inifile libvirtd mod modplug mpeg2 mpeg3 multitarget ncurses objc pdo printsupport python qt5 spice sqlite sslv3 system-ffmpeg system-harfbuzz system-jpeg -szip tcl thinkpad timidity traceroute uxa -v4l2 vlc wxwidgets x264 xslt zenmap ziffy"

  ... /etc/portage/package.use/*:
  mail-mta/ssmtp    ssl mta
  net-misc/wget     ssl
  app-editors/emacs   -dbus -svg -ssl -gtk -gtk3
  dev-libs/boehm-gc   threads
  dev-libs/libpcre    pcre16
  dev-util/cmake      -qt4 -qt5
  gnome-base/librsvg  -tools
  media-libs/mesa     -vaapi
  app-crypt/pinentry gtk -qt4 -qt5
  dev-libs/libpcre pcre16

  unmasked packages in /etc/portage/package.unmask/*:
  media-video/ffmpeg
  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-4.9.3
 [2] x86_64-pc-linux-gnu-5.4.0 *
Available Java Virtual Machines:
  [1]   icedtea-bin-7  system-vm
  [2]   icedtea-bin-8 
Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   jython2.7 (fallback)
Available Ruby profiles:
  [1]   ruby20 (with Rubygems) *
  [2]   ruby21 (with Rubygems)
  -----------------------------------------------------------------

Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-5.4.0, glibc-2.23-r2, 4.7.2-hardened x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.7.2-hardened-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.2
KiB Mem:    65285352 total,   1617828 free
KiB Swap:   67108860 total,  67108860 free
Timestamp of repository gentoo: Tue, 30 Aug 2016 04:05:22 +0000
sh bash 4.3_p46
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
ccache version 3.2.7 [disabled]
app-shells/bash:          4.3_p46::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/ccache:          3.2.7::gentoo
dev-util/cmake:           3.6.1::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.2-r1::gentoo
sys-apps/openrc:          0.21.4::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.26.1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.7::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /usr/lib64/fax /usr/share/config /usr/share/gnupg/qualified.txt /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding btrfs bzip2 cairo cdda cdr cli colord cracklib crypt cups custom-cflags cxx dbus dri drmkms dts dvd dvdr ecc eds emacs emboss encode evo exif extraengine fam firefox flac gcj gdbm gif glamor gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk2 gtk3 gzip iconv imlib inifile introspection ipv6 jpeg lcms ldap libnotify libsecret libvirtd mad mmx mmxext mng mod modplug modules mp3 mp4 mpeg mpeg2 mpeg3 multilib multitarget nautilus ncurses nls nptl objc ogg opengl openmp pam pango pax_kernel pcre pdf pdo png policykit ppds printsupport pulseaudio python qt3support qt4 qt5 readline sdl seccomp session spell spice sqlite sse sse2 ssl sslv3 startup-notification svg system-ffmpeg system-harfbuzz system-jpeg systemd tcl tcpd thinkpad tiff timidity traceroute tracker truetype udev udisks unicode upower usb uxa vlc vorbis wxwidgets x264 xattr xcb xml xslt xtpax xv xvid zenmap ziffy zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="hi" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-08-30 07:49:04 UTC
Created attachment 444412 [details]
emerge-history.txt
Comment 2 Toralf Förster gentoo-dev 2016-08-30 07:49:07 UTC
Created attachment 444414 [details]
environment
Comment 3 Toralf Förster gentoo-dev 2016-08-30 07:49:09 UTC
Created attachment 444416 [details]
games-board:sirius-0.8.0-r1:20160830-050523.log
Comment 4 Marco Ziebell 2016-08-30 19:05:52 UTC
I can not confirm this

Portage 2.2.28 (python 2.7.10-final-0, default/linux/amd64/13.0, gcc-5.4.0, glibc-2.22-r4, 4.6.5-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.6.5-gentoo-x86_64-AMD_A6-4400M_APU_with_Radeon-tm-_HD_Graphics-with-gentoo-2.2
KiB Mem:    15809020 total,   7386516 free
KiB Swap:    3583996 total,   3583996 free
Timestamp of repository gentoo: Tue, 30 Aug 2016 17:15:01 +0000
sh dash 0.5.8.2
ld GNU gold (Gentoo 2.25.1 p1.1 2.25.1) 1.11
ccache version 3.2.4 [disabled]
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.22.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/ccache:          3.2.4::gentoo
dev-util/cmake:           3.5.2-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21.3::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r1::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            5.3.0::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="de_DE.utf8"
LDFLAGS="-Wl,-O1 -Wl,--icf=all -Wl,--as-needed -Wl,--hash-style=gnu -march=native -mtune=native -pipe -w -g0 -O2 -flto=2 -fuse-linker-plugin -ffat-lto-objects --param lto-partitions=1 -flto-partition=none -fdata-sections -ffunction-sections -fdevirtualize-at-ltrans -fomit-frame-pointer -ftree-vectorize -fno-aggressive-loop-optimizations -funswitch-loops -fgcse-sm -fgcse-las -fgcse-after-reload -fopenmp-simd -ftree-partial-pre -fbranch-target-load-optimize -finline-functions -funroll-loops -mvzeroupper -minline-all-stringops -malign-data=cacheline -maccumulate-outgoing-args --param prefetch-latency=600 -mtls-dialect=gnu2"
MAKEOPTS="-j2 V=0"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 branding gpl hdaps ipv6 nls nptl openmp pic seccomp ssl threads truetype unicode vim-syntax xattr xcb" ABI_X86="64" CPU_FLAGS_X86="aes avx fma3 fma4 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3 xop" ELIBC="glibc" INPUT_DEVICES="evdev" KERNEL="linux" L10N="de de_DE en en_GB en_US" LIBREOFFICE_EXTENSIONS="presenter-console pdfimport presenter-minimizer" LINGUAS="de de_DE en en_GB en_US" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20" USERLAND="GNU" VIDEO_CARDS="radeon r600" XFCE_PLUGINS="trash clock battery power"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

games-board/sirius-0.8.0-r1::gentoo was built with the following:
USE="nls" ABI_X86="64"
Comment 5 Toralf Förster gentoo-dev 2016-08-31 12:07:02 UTC
Created attachment 444608 [details]
emerge-info.txt

same issue at another image, maybe the USE flags/profile helps ?
Comment 6 Toralf Förster gentoo-dev 2016-08-31 12:07:07 UTC
Created attachment 444610 [details]
emerge-history.txt
Comment 7 Toralf Förster gentoo-dev 2016-08-31 12:07:10 UTC
Created attachment 444612 [details]
environment
Comment 8 Toralf Förster gentoo-dev 2016-08-31 12:07:12 UTC
Created attachment 444614 [details]
games-board:sirius-0.8.0-r1:20160831-120239.log
Comment 9 Marco Ziebell 2016-08-31 12:25:40 UTC
Possible, but the game by itself does not have "serious" use-flags
https://gitweb.gentoo.org/repo/gentoo.git/tree/games-board/sirius/sirius-0.8.0-r1.ebuild

usually I resolve problems like "GLIBC_*" through recomiling GLIBC, linker, compiler, etc with the GCC-5.4.0.

There were some changes in GCC-5 from gcc-4.9 regarding that symbol, but I can't find the thread
Comment 10 Austin English (RETIRED) gentoo-dev 2016-09-01 21:59:53 UTC
I can't reproduce this either, unfortunately.
Comment 11 David Seifert gentoo-dev 2016-12-12 09:13:13 UTC
Classic libm underlinking. Added fix, cleaned up ebuild.

commit efe212ccd4e79cd70c9d343912913038445d84ee
Author: David Seifert <soap@gentoo.org>
Date:   Mon Dec 12 10:11:49 2016 +0100

    games-board/sirius: Fix underlinking
    
    Gentoo-bug: 592414
    * Turn sed's into PATCHES
    * Fix configure.ac
    * Include a check for sqrt() in libm
    * Simplify ebuild