-- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.a -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.a - found CMake Error at cmake/FindFFTW.cmake:159 (message): The FFTW library /usr/lib64/libfftw3f.a cannot be used with shared libraries. Provide a different FFTW library by setting FFTWF_LIBRARY. If you don't have a different one, recompile FFTW with "--enable-shared" or $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-gnome-unstable_20160728-183305) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- make.conf: USE="pax_kernel xtpax -cdinstall -oci8 -bindist alisp alsa avcodec bugzilla cdda -cgi consolekit csc custom-cflags -drmkms emacs exif -git gles gtk2 gui gzip -ibus imap -jadetex javascript kerberos -lapack logrotate mdnsresponder-compat mp4 multimedia mysqli networking -nscd offensive openmpi osc pkcs11 policykit pulseaudio python qemu semantic-desktop smpeg sockets sqlite3 ssh ssh-askpass sslv2 sslv3 svg system-libevent szip thinkpad tls truetype udisks vpx widgets -x265 xinerama xmlreader -ziffy" package.use flags: mail-mta/ssmtp ssl net-misc/wget ssl app-editors/emacs -dbus -svg -ssl -gtk -gtk3 net-misc/iputils -caps -filecaps ----------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-4.9.3 [2] x86_64-pc-linux-gnu-5.4.0 * Available Java Virtual Machines: [1] icedtea-bin-7 system-vm [2] icedtea-bin-8 Available Python interpreters, in order of preference: [1] python3.4 [2] python3.5 (fallback) [3] python2.7 (fallback) [4] pypy3 (fallback) [5] pypy (fallback) Available Ruby profiles: [1] ruby20 (with Rubygems) * [2] ruby21 (with Rubygems) ----------------------------------------------------------------- Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0/desktop/gnome, gcc-5.4.0, glibc-2.23-r2, 4.6.5-hardened x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.6.5-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16156124 total, 1946724 free KiB Swap: 16777212 total, 16711372 free Timestamp of repository gentoo: Tue, 02 Aug 2016 00:23:32 +0000 sh bash 4.3_p46 ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1 app-shells/bash: 4.3_p46::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo, 3.5.2::gentoo dev-util/cmake: 3.6.1::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.2-r1::gentoo sys-apps/openrc: 0.21.3::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.26.1::gentoo sys-devel/gcc: 4.9.3::gentoo, 5.4.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/gamedata/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose --verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alisp alsa amd64 avcodec berkdb bluetooth branding bugzilla bzip2 cairo cdda cdr cli colord consolekit cracklib crypt csc cups custom-cflags cxx dbus dri dts dvd dvdr eds emacs emboss encode evo exif fam firefox flac fortran gdbm gif glamor gles gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk2 gui gzip iconv imap introspection ipv6 javascript jpeg kerberos lcms ldap libnotify libsecret logrotate mad mdnsresponder-compat mmx mmxext mng modules mp3 mp4 mpeg multilib multimedia mysqli nautilus ncurses networking nls nptl offensive ogg opengl openmp openmpi osc pam pango pax_kernel pcre pdf pkcs11 png policykit ppds pulseaudio python qemu qt3support qt4 readline sdl seccomp semantic-desktop session smpeg sockets spell sqlite3 sse sse2 ssh ssh-askpass ssl sslv2 sslv3 startup-notification svg system-libevent szip tcpd thinkpad tiff tls tracker truetype udev udisks unicode upower usb vorbis vpx widgets wxwidgets x264 xattr xcb xinerama xml xmlreader xtpax xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="el ks mk sr ug" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sci-chemistry/gromacs-2016_rc1::gentoo was built with the following: USE="X doc fftw hwloc offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -test" ABI_X86="64" CPU_FLAGS_X86="avx sse2 sse4_1 -avx2 -fma4"
Created attachment 442250 [details] CMakeError.log
Created attachment 442252 [details] CMakeOutput.log
Created attachment 442254 [details] emerge-history.txt
Created attachment 442256 [details] environment
Created attachment 442258 [details] sci-chemistry:gromacs-2016_rc1:20160802-020141.log
*** This bug has been marked as a duplicate of bug 590310 ***
