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Bug 585516 - sci-libs/spqr-1.3.1 : configure: error: Could not find cholmod with blas library
Summary: sci-libs/spqr-1.3.1 : configure: error: Could not find cholmod with blas library
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard: Pending removal: 2018-12-11
Keywords: PMASKED
Depends on:
Blocks: 627094
  Show dependency tree
 
Reported: 2016-06-10 09:35 UTC by Toralf Förster
Modified: 2018-11-11 11:19 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
config.log (config.log,59.54 KB, text/plain)
2016-06-10 09:35 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,292.25 KB, text/plain)
2016-06-10 09:35 UTC, Toralf Förster
Details
environment (environment,103.10 KB, text/plain)
2016-06-10 09:35 UTC, Toralf Förster
Details
sci-libs:spqr-1.3.1:20160610-032024.log (sci-libs:spqr-1.3.1:20160610-032024.log,11.70 KB, text/plain)
2016-06-10 09:35 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-06-10 09:35:07 UTC
checking for cholmod_blas.h... yes
checking for cholmod_l_free in -lcholmod... no
configure: error: Could not find cholmod with blas library

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-libs/spqr-1.3.1/work/spqr-1.3.1_build/config.log


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-13.0-unstable_20160605-224630) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  make.conf: USE="sse2 pax_kernel xtpax -cdinstall -oci8 -bindist apache2 avx avx2 -btrfs cairo cdb custom-optimization dot dvb ecc ffmpeg freetds gtk3 gtkstyle help jadetex javascript mdnsresponder-compat minimal mpg123 -multitarget openexr openmpi pkcs11 pwquality qemu qt5 sddm snmp sse4_1 -ssh -ssse3 swscale -system-cairo system-sqlite tcpd truetype vpx webkit webstart wma -x264 xkb"

  -----------------------------------------------------------------

Portage 2.3.0_rc1 (python 3.4.3-final-0, default/linux/amd64/13.0, gcc-5.3.0, glibc-2.23-r2, 4.5.6-hardened x86_64)
=================================================================
System uname: Linux-4.5.6-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16157888 total,   2212132 free
KiB Swap:   16777212 total,  16721072 free
Timestamp of repository gentoo: Fri, 10 Jun 2016 01:22:14 +0000
sh bash 4.3_p42-r2
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.3_p42-r2::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r1::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r3::gentoo
dev-util/cmake:           3.5.2-r1::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            5.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2-r2::gentoo
sys-kernel/linux-headers: 4.6::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/omega.conf /etc/stunnel/stunnel.conf /usr/share/config /usr/share/qpsmtpd/plugins /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 apache2 avx avx2 berkdb bzip2 cairo cdb cli cracklib crypt custom-optimization cxx dot dri dvb ecc ffmpeg fortran freetds gdbm gtk3 gtkstyle help iconv ipv6 jadetex javascript mdnsresponder-compat minimal mmx mmxext modules mpg123 multilib ncurses nls nptl openexr openmp openmpi pam pax_kernel pcre pkcs11 pwquality qemu qt5 readline sddm seccomp session snmp sse sse2 sse4_1 ssl swscale system-sqlite tcpd truetype unicode vpx webkit webstart wma xattr xkb xtpax zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-06-10 09:35:10 UTC
Created attachment 437046 [details]
config.log
Comment 2 Toralf Förster gentoo-dev 2016-06-10 09:35:12 UTC
Created attachment 437048 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2016-06-10 09:35:15 UTC
Created attachment 437050 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2016-06-10 09:35:18 UTC
Created attachment 437052 [details]
sci-libs:spqr-1.3.1:20160610-032024.log