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Bug 584668 - dev-util/emilpro-3-r3 : /.../ld: CMakeFiles/.../model.cc.o: undefined reference to symbol 'pthread_create@@GLIBC_2.2.5'
Summary: dev-util/emilpro-3-r3 : /.../ld: CMakeFiles/.../model.cc.o: undefined referen...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal with 1 vote (vote)
Assignee: Rick Farina (Zero_Chaos)
URL:
Whiteboard:
Keywords:
: 612892 (view as bug list)
Depends on:
Blocks:
 
Reported: 2016-05-31 15:26 UTC by Toralf Förster
Modified: 2017-06-13 20:57 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
dev-util:emilpro-3-r3:20160531-111238.log (dev-util:emilpro-3-r3:20160531-111238.log,165.67 KB, text/plain)
2016-05-31 15:26 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,440.26 KB, text/plain)
2016-05-31 15:26 UTC, Toralf Förster
Details
environment (environment,114.76 KB, text/plain)
2016-05-31 15:26 UTC, Toralf Förster
Details
pthread.patch (pthread.patch,1.70 KB, patch)
2016-12-16 23:06 UTC, eroen
Details | Diff

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Description Toralf Förster gentoo-dev 2016-05-31 15:26:10 UTC
/usr/bin/cmake -E cmake_link_script CMakeFiles/emilpro.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-g++   -march=native -O2 -pipe  -std=c++0x -Wall -D_GLIBCXX_USE_NANOSLEEP -DPACKAGE=emilpro -DPACKAGE_VERSION=1   -Wl,-O1 -Wl,--as-needed CMakeFiles/emilpro.dir/src/addresshistory.cc.o CMakeFiles/emilpro.dir/src/architecturefactory.cc.o CMakeFiles/emilpro.dir/src/bfd-disassembly.cc.o CMakeFiles/emilpro.dir/src/bfd-provider.cc.o CMakeFiles/emilpro.dir/src/configuration.c
/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/emilpro.dir/src/model.cc.o: undefined reference to symbol 'pthread_create@@GLIBC_2.2.5'
/lib64/libpthread.so.0: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[2]: *** [CMakeFiles/emilpro.dir/build.make:711: emilpro] Error 1


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-desktop-unstable_20160522-215649) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  make.conf: USE="mmx sse sse2 pax_kernel xtpax -cdinstall -oci8 -bindist cairo cgi consolekit csc dot dvb dvd -egl evdev extraengine -gcj -gnomecanvas gtk3 gudev -icu inifile introspection jadetex -javafx kerberos -mod multitarget postgres -sockets source sql ssh-askpass svg swscale system-libevent system-sqlite -szip tk uml usbredir uxa -xinetd xmp -xvfb xz zip"

  -----------------------------------------------------------------

Portage 2.3.0_rc1 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop, gcc-5.3.0, glibc-2.23-r2, 4.5.5-hardened-r2 x86_64)
=================================================================
System uname: Linux-4.5.5-hardened-r2-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16157888 total,   3571724 free
KiB Swap:   16777212 total,  16730224 free
Timestamp of repository gentoo: Tue, 31 May 2016 09:50:58 +0000
sh bash 4.3_p42-r2
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
ccache version 3.2.5 [disabled]
app-shells/bash:          4.3_p42-r2::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo
dev-util/ccache:          3.2.5::gentoo
dev-util/cmake:           3.5.2-r1::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21::gentoo
sys-apps/sandbox:         2.10-r2::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            5.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2-r1::gentoo
sys-kernel/linux-headers: 4.6::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/omega.conf /etc/stunnel/stunnel.conf /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/lib/redmine/config /var/rancid/.cloginrc /var/yp/Makefile"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /var/lib/redmine/config/locales /var/lib/redmine/config/settings.yml"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--verbose-conflicts --color=n --nospinner --tree --quiet-build"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cgi cli consolekit cracklib crypt csc cups cxx dbus dot dri dts dvb dvd dvdr emboss encode evdev exif extraengine fam firefox flac fortran gdbm gif glamor gpm gtk gtk3 gudev iconv inifile introspection ipv6 jadetex jpeg kerberos lcms ldap libnotify mad mmx mmxext mng modules mp3 mp4 mpeg multilib multitarget ncurses nls nptl ogg opengl openmp pam pango pax_kernel pcre pdf png policykit postgres ppds qt3support qt4 readline sdl seccomp session source spell sql sse sse2 ssh-askpass ssl startup-notification svg swscale system-libevent system-sqlite tcpd tiff tk truetype udev udisks uml unicode upower usb usbredir uxa vorbis wxwidgets x264 xattr xcb xml xmp xtpax xv xvid xz zip zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-05-31 15:26:13 UTC
Created attachment 435952 [details]
dev-util:emilpro-3-r3:20160531-111238.log
Comment 2 Toralf Förster gentoo-dev 2016-05-31 15:26:15 UTC
Created attachment 435954 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2016-05-31 15:26:18 UTC
Created attachment 435956 [details]
environment
Comment 4 eroen 2016-12-16 23:06:54 UTC
Created attachment 456416 [details, diff]
pthread.patch

Upstream has fixed this[1], I have attached a backported version of their patch. Please apply it after all the other patches currently in the ebuild.

1: https://github.com/SimonKagstrom/emilpro/commit/18569c69b2
2: https://github.com/SimonKagstrom/emilpro/commit/c024e9b6b6
Comment 5 Fabio Rossi 2017-06-13 20:56:36 UTC
*** Bug 612892 has been marked as a duplicate of this bug. ***