emerge -DNupv world These are the packages that would be merged, in reverse order: Calculating dependencies... done! [nomerge ] pentoo/pentoo-2015.1::pentoo USE="analyzer cracking database desktop exploit footprint forensics forging fuzzers misc mitm mobile nfc proxies radio rce voip wireless -bluetooth -pentoo -scanner" [nomerge ] pentoo/pentoo-desktop-2016.1::pentoo USE="X hardened kde samba -cdr -enlightenment -livecd-stage1 -mate -pentoo -pulseaudio -xfce" [ebuild U ~] www-client/google-chrome-50.0.2661.86::gentoo [50.0.2661.75::gentoo] USE="plugins" LINGUAS="ru -am -ar -bg -bn -ca -cs -da -de -el -en_GB -es -es_LA -et -fa -fake_bidi -fi -fil -fr -gu -he -hi -hr -hu -id -it -ja -kn -ko -lt -lv -ml -mr -ms -nb -nl -pl -pt_BR -pt_PT -ro -sk -sl -sr -sv -sw -ta -te -th -tr -uk -vi -zh_CN -zh_TW" 47226 KiB [nomerge ] pentoo/pentoo-2015.1::pentoo USE="analyzer cracking database desktop exploit footprint forensics forging fuzzers misc mitm mobile nfc proxies radio rce voip wireless -bluetooth -pentoo -scanner" [nomerge ] pentoo/pentoo-radio-2015.3-r4::pentoo USE="-livecd-stage1 -minipentoo -mono" [ebuild U ~] net-wireless/gnuradio-3.7.9.2:0/3.7.9.2::gentoo [3.7.9:0/3.7.9::gentoo] USE="alsa analog audio channels digital dtv fcd fec filter grc noaa qt4 sdl trellis uhd utils wavelet wxwidgets -atsc -doc -examples -jack -log -oss -pager -performance-counters -portaudio {-test} -vocoder -zeromq" PYTHON_TARGETS="python2_7" 0 KiB [nomerge ] pentoo/pentoo-desktop-2016.1::pentoo USE="X hardened kde samba -cdr -enlightenment -livecd-stage1 -mate -pentoo -pulseaudio -xfce" [nomerge ] kde-misc/plasma-nm-0.9.3.6:4::gentoo USE="modemmanager (-aqua) -debug -openconnect" LINGUAS="ru -ar -bg -bs -ca -ca@valencia -cs -da -de -el -en_GB -eo -es -et -fa -fi -fr -ga -gl -hr -hu -is -it -ja -km -ko -lt -lv -mai -mr -ms -nb -nds -nl -nn -pa -pl -pt -pt_BR -ro -sk -sl -sr -sr@ijekavian -sr@ijekavianlatin -sr@latin -sv -th -tr -ug -uk -zh_CN -zh_TW" [nomerge ] net-libs/libnm-qt-0.9.8.3:0/1::gentoo USE="modemmanager (-aqua) -debug -doc {-test}" [ebuild U ] net-misc/networkmanager-1.0.12-r1::gentoo [1.0.12::gentoo] USE="connection-sharing consolekit dhclient introspection modemmanager ncurses nss ppp wext wifi -bluetooth -dhcpcd -gnutls -resolvconf (-selinux) -systemd -teamd {-test} -vala -zeroconf" ABI_X86="(64) -32 (-x32)" 0 KiB [ebuild U ] sys-devel/gnuconfig-20151214::gentoo [20150727::gentoo] 47 KiB Total: 4 packages (4 upgrades), Size of downloads: 47273 KiB !!! Multiple package instances within a single package slot have been pulled !!! into the dependency graph, resulting in a slot conflict: net-wireless/gnuradio:0 (net-wireless/gnuradio-3.7.9.2:0/3.7.9.2::gentoo, ebuild scheduled for merge) pulled in by (no parents that aren't satisfied by other packages in this slot) (net-wireless/gnuradio-3.7.9:0/3.7.9::gentoo, installed) pulled in by >=net-wireless/gnuradio-3.7_rc:0/3.7.9=[fcd,python_targets_python2_7(-),-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),python_single_target_python2_7(+)] required by (net-wireless/gr-osmosdr-0.1.4_p20150730:0/0.1.4_p20150730::gentoo, installed) ^^^^^^^^^ (and 3 more with the same problem) -------------- emerge --info Portage 2.2.26 (python 2.7.10-final-0, hardened/linux/amd64, gcc-4.9.3, glibc-2.22-r4, 4.0.8-pentoo x86_64) ================================================================= System uname: Linux-4.0.8-pentoo-x86_64-Intel-R-_Core-TM-_i5-3320M_CPU_@_2.60GHz-with-gentoo-2.2 KiB Mem: 7981376 total, 2741556 free KiB Swap: 4194300 total, 4086276 free Timestamp of repository gentoo: Thu, 21 Apr 2016 06:00:01 +0000 sh bash 4.3_p42-r1 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 app-shells/bash: 4.3_p42-r1::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo dev-util/cmake: 3.3.1-r1::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.19.1::gentoo sys-apps/sandbox: 2.10-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.14.1::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.9.3::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r4::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 steam-overlay location: /var/lib/layman/steam-overlay masters: gentoo priority: 0 pentoo location: /var/lib/layman/pentoo masters: gentoo priority: 1 local-overlay location: /usr/local/portage masters: gentoo priority: 2 ABI="amd64" ABI_X86="64" ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA PUEL AdobeFlash-11.x Google-TOS dlj-1.1 google-chrome Oracle-BCLA-JavaSE Intel-SDP skype-4.0.0.7-copyright baudline" ACCEPT_PROPERTIES="*" ACCEPT_RESTRICT="*" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ANDROID_HOME="/opt/android-sdk-update-manager" ANDROID_SWT="/usr/share/swt-3.7/lib" ANT_HOME="/usr/share/ant" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="amd64" AUTOCLEAN="yes" BOOTSTRAP_USE="cxx unicode internal-glib python_targets_python3_4 python_targets_python2_7 multilib hardened pax_kernel pic xtpax -jit -orc" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CFLAGS_amd64="-m64" CFLAGS_x32="-mx32" CFLAGS_x86="-m32" CHOST="x86_64-pc-linux-gnu" CHOST_amd64="x86_64-pc-linux-gnu" CHOST_x32="x86_64-pc-linux-gnux32" CHOST_x86="i686-pc-linux-gnu" CLEAN_DELAY="5" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" COLLISION_IGNORE="/lib/modules/* *.py[co] *$py.class */dropin.cache" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /opt/sonar/conf /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CXXFLAGS="-march=native -O2 -pipe" DEFAULT_ABI="amd64" DISPLAY=":0" DISTDIR="/usr/portage/distfiles" EDITOR="/usr/bin/mcedit" ELIBC="glibc" EMERGE_DEFAULT_OPTS=" --ask-enter-invalid --keep-going=y --binpkg-respect-use=y --tree --verbose --with-bdeps=y --autounmask=n --buildpkg-exclude "sys-kernel/compat-drivers sys-kernel/ax88179_178a x11-drivers/ati-drivers x11-drivers/nvidia-drivers sys-fs/zfs-kmod sys-kernel/spl sys-power/bbswitch pentoo/pentoo-installer x11-drivers/xf86-video-virtualbox app-emulation/virtualbox-guest-additions app-emulation/virtualbox-modules app-emulation/vmware-modules app-emulation/open-vm-tools-kmod sys-kernel/genkernel sys-kernel/pentoo-sources" --usepkg-exclude "sys-kernel/compat-drivers sys-kernel/ax88179_178a x11-drivers/ati-drivers x11-drivers/nvidia-drivers sys-fs/zfs-kmod sys-kernel/spl sys-power/bbswitch pentoo/pentoo-installer x11-drivers/xf86-video-virtualbox app-emulation/virtualbox-guest-additions app-emulation/virtualbox-modules app-emulation/vmware-modules app-emulation/open-vm-tools-kmod sys-kernel/genkernel sys-kernel/pentoo-sources"" EMERGE_WARNING_DELAY="10" EPREFIX="" EROOT="/" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FETCHCOMMAND="wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
portage subslot dep calculation failure?
Somehow, with "world" portage does not detect that few deps need to be rebuilt too. Here is what I have on gnuradio upgrade specifically: bash# emerge -pv gnuradio These are the packages that would be merged, in reverse order: Calculating dependencies... done! [ebuild rR *] net-wireless/gr-air-modes-9999::pentoo USE="gui -fgfs -rtl -uhd" PYTHON_TARGETS="python2_7" 0 KiB [ebuild rR ~] net-wireless/gqrx-2.5::gentoo USE="-pulseaudio" 0 KiB [ebuild rR ~] net-wireless/gr-osmosdr-0.1.4_p20150730:0/0.1.4_p20150730::gentoo USE="fcd hackrf iqbalance python rtlsdr uhd -bladerf (-mirisdr)" PYTHON_TARGETS="python2_7" 0 KiB [ebuild rR ~] net-wireless/gr-iqbal-0.37.2:0/0.37.2::gentoo PYTHON_TARGETS="python2_7" 0 KiB [ebuild r U ~] net-wireless/gnuradio-3.7.9.2:0/3.7.9.2::gentoo [3.7.9:0/3.7.9::gentoo] USE="alsa analog audio channels digital dtv fcd fec filter grc noaa qt4 sdl trellis uhd utils wavelet wxwidgets -atsc -doc -examples -jack -log -oss -pager -performance-counters -portaudio {-test} -vocoder -zeromq" PYTHON_TARGETS="python2_7" 0 KiB Total: 5 packages (1 upgrade, 4 reinstalls), Size of downloads: 0 KiB The following packages are causing rebuilds: (net-wireless/gnuradio-3.7.9.2:0/3.7.9.2::gentoo, ebuild scheduled for merge) causes rebuilds for: (net-wireless/gr-air-modes-9999:0/0::pentoo, ebuild scheduled for merge) (net-wireless/gr-osmosdr-0.1.4_p20150730:0/0.1.4_p20150730::gentoo, ebuild scheduled for merge) (net-wireless/gr-iqbal-0.37.2:0/0.37.2::gentoo, ebuild scheduled for merge) (net-wireless/gqrx-2.5:0/0::gentoo, ebuild scheduled for merge)
Created attachment 432032 [details] config.tar.xz the output of the following command: tar -cJf /tmp/config.tar.xz -C / ./etc/portage ./var/db/pkg ./var/lib/portage/world --exclude CONTENTS --exclude environment.bz2 --exclude 'NEEDED*' --exclude '*.ebuild'
Since there is no progress so far and the bug might not be fix soonest, I'm going to upgrade gnuradio manually. I'm attaching some configs (copied from bug #566024) with a hope that it will help to reproduce the problem.
Created attachment 432034 [details] debug.log.xz output of the following: emerge -DNUupv --with-bdeps=y --debug world > debug.log 2>&1 xz -9 debug.log
There is one more package got blocked with the similar problem after recent sync: app-text/poppler:0 (app-text/poppler-0.42.0:0/59::gentoo, ebuild scheduled for merge) pulled in by (no parents that aren't satisfied by other packages in this slot) (app-text/poppler-0.32.0:0/51::gentoo, installed) pulled in by app-text/poppler:0/51 required by (app-office/libreoffice-bin-5.0.5.2-r1:0/0::gentoo, installed) ^^^^^ >=app-text/poppler-0.12.3-r3:0/51= required by (app-text/texlive-core-2014-r4:0/0::gentoo, installed) ^^^^^^ (and 2 more with the same problems)
I keyworded app-office/libreoffice-bin-5.1.2.2 (it is compiled against the currently stable poppler) and the same problem show up. emerge -1 libreoffice-bin worked, but "emerge -DNu @world" didn't work.
we have yet another user with the same problem, but the list of problematic packages is bigger: https://bpaste.net/show/4ed26dc3520f
Does anybody look at the bug? The bug sounds very critical.
(In reply to Anton Bolshakov from comment #9) > Does anybody look at the bug? The bug sounds very critical. Today I plan to see if I can use your configuration to reproduce it. As a workaround, typically you can use the --verbose-conflicts option to see which packages need to rebuilt, and you can rebuild them manually. Alternatively, you can use the --ignore-built-slot-operator-deps=y option to temporarily ignore the conflict. If you do that, then the rebuilds might trigger automatically on the next emerge run. (In reply to Anton Bolshakov from comment #8) > we have yet another user with the same problem, but the list of problematic > packages is bigger: > > https://bpaste.net/show/4ed26dc3520f Yeah, that could be the same bug.
(In reply to Anton Bolshakov from comment #3) > Created attachment 432032 [details] > config.tar.xz > > the output of the following command: > tar -cJf /tmp/config.tar.xz -C / ./etc/portage ./var/db/pkg > ./var/lib/portage/world --exclude CONTENTS --exclude environment.bz2 > --exclude 'NEEDED*' --exclude '*.ebuild' With your configuration, it looks like I'm getting similar results. I'm using these repos: gentoo e272bacc12364f633ee7a3b8024aaa117011a708 pentoo 4f1c01d19c2a91193ae5b0e1270d98970aeabd54 I'm testing with portage-2.2.28, since I want to eliminate interactions from bug 566024 and bug 567686. Using emerge -DNupv world, I see what look like solvable slot conflicts for ncurses, poppler, and gnuradio. If I add the --changed-deps option, the ncurses conflict is the only one that remains. I will investigate why these conflicts are not solved.
(In reply to Zac Medico from comment #11) > Using emerge -DNupv world, I see what look like solvable slot conflicts for > ncurses, poppler, and gnuradio. If I add the --changed-deps option, the > ncurses conflict is the only one that remains. I will investigate why these > conflicts are not solved. Eventually, I figured out that this blocker was the only thing preventing it from solving: [blocks B ] <dev-python/ipython-4.0.0[smp] ("<dev-python/ipython-4.0.0[smp]" is blocking dev-python/ipyparallel-5.0.1) With portage-2.2.28 it solved after putting '>=dev-python/ipython-4' in package.mask. I still need to test this configuration with portage-2.2.26, to see if bug 566024 and/or bug 567686 may be involved.
(In reply to Anton Bolshakov from comment #8) > we have yet another user with the same problem, but the list of problematic > packages is bigger: > > https://bpaste.net/show/4ed26dc3520f Looking at this again, it fails due to an unsatisfied dependency: emerge: there are no ebuilds to satisfy "net-analyzer/wireshark:0/1.12.8=[lua]". (dependency required by "net-analyzer/cloudshark-1.0.4::gentoo" [installed]) The means the dependency calculation didn't finish, and the slot conflicts might have solved if the dependency calculation run to completion. I know that this is not obvious to users, so we should do something about that.
Created attachment 433756 [details] successful dependency calculation (>=dev-python/ipython-4 masked) I get the same results with 2.2.26 and 2.2.28, so it doesn't seem like bug 566024 or bug 567686 are involved.
Actually, maybe bug 566024 or bug 567686 played a role, but I didn't reproduce that result. It's possible for hash randomization to affect dependency resolver outcomes.
It were way to many changes in portage since 2016 so I guess nobody would be able to reproduce or fix this bug.
