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Bug 575908 - sci-chemistry/tinker-7.1.2 : file collision with sci-libs/ssm-1.4:0::gentoo
Summary: sci-chemistry/tinker-7.1.2 : file collision with sci-libs/ssm-1.4:0::gentoo
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-02-28 14:27 UTC by Toralf Förster
Modified: 2016-02-28 14:27 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-history.txt (emerge-history.txt,386.02 KB, text/plain)
2016-02-28 14:27 UTC, Toralf Förster
Details
sci-chemistry:tinker-7.1.2:20160228-131905.log (sci-chemistry:tinker-7.1.2:20160228-131905.log,78.62 KB, text/plain)
2016-02-28 14:27 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2016-02-28 14:27:36 UTC
 * Detected file collision(s):
 * 
 * 	/usr/bin/bar
 * 	/usr/bin/superpose
 * 	/usr/bin/scan
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sci-libs/ssm-1.4:0::gentoo
 * 	/usr/bin/superpose
 * 
 * mail-client/nmh-1.3-r3:0::gentoo
 * 	/usr/bin/scan
 * 
 * sys-apps/bar-1.11.1:0::gentoo
 * 	/usr/bin/bar
 * 
 * Package 'sci-chemistry/tinker-7.1.2' NOT merged due to file


$ cat emerge-info.txt
  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named amd64-desktop-unstable_20160220-211358) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

  make.conf: USE="mmx sse sse2 pax_kernel -cdinstall -oci8 bindist apache2 cgi compat dnssec gif kvm ldap minizip nss offensive opencv openmpi pcre16 php png postgres pwquality python sqlite ssh-askpass svg thinkpad threads tools wav -widgets wma -x264 xml xmlreader xvmc"

  -----------------------------------------------------------------
Portage 2.2.27 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop, gcc-5.3.0, glibc-2.22-r2, 4.4.2-hardened x86_64)
=================================================================
System uname: Linux-4.4.2-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164680 total,   2549520 free
KiB Swap:   16777212 total,  16728188 free
Timestamp of repository gentoo: Sun, 28 Feb 2016 10:23:21 +0000
sh bash 4.3_p42-r2
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
ccache version 3.2.4 [disabled]
app-shells/bash:          4.3_p42-r2::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.22.1::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo
dev-util/ccache:          3.2.4::gentoo
dev-util/cmake:           3.4.3::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.20.5::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r2::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: 1

local
    location: /usr/local/portage
    masters: gentoo
    priority: 2

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/entropy /usr/lib64/fax /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/spool/fax/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--deep --verbose-conflicts --color=n --nospinner --tree --quiet-build --accept-properties=-interactive --accept-restrict=-fetch"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 apache2 berkdb bindist bluetooth branding bzip2 cairo cdda cdr cgi cli compat consolekit cracklib crypt cups cxx dbus dnssec dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif glamor gpm gtk iconv ipv6 jpeg kvm lcms ldap libnotify mad minizip mmx mmxext mng modules mp3 mp4 mpeg multilib ncurses nls nptl nss offensive ogg opencv opengl openmp openmpi pam pango pax_kernel pcre pcre16 pdf php png policykit postgres ppds pwquality python qt3support qt4 readline sdl seccomp session spell sqlite sse sse2 ssh-askpass ssl startup-notification svg tcpd thinkpad threads tiff tools truetype udev udisks unicode upower usb vorbis wav wma wxwidgets xattr xcb xml xmlreader xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-02-28 14:27:39 UTC
Created attachment 426900 [details]
emerge-history.txt
Comment 2 Toralf Förster gentoo-dev 2016-02-28 14:27:41 UTC
Created attachment 426902 [details]
sci-chemistry:tinker-7.1.2:20160228-131905.log