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Bug 572126 - dev-python/pyzmq-15.2.0 - In function `main': timer_createj5wPVD.c:(.text+0x15): undefined reference to `timer_create'
Summary: dev-python/pyzmq-15.2.0 - In function `main': timer_createj5wPVD.c:(.text+0x1...
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
Depends on:
Blocks: gcc-5
  Show dependency tree
Reported: 2016-01-16 17:51 UTC by Juergen Rose
Modified: 2016-06-28 22:29 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

build.log (build.log,50.95 KB, text/plain)
2016-01-16 17:51 UTC, Juergen Rose
emerge-info.txt (emerge-info.txt,6.50 KB, text/plain)
2016-06-28 16:17 UTC, Toralf Förster
dev-python:pyzmq-15.2.0:20160628-161400.log (dev-python:pyzmq-15.2.0:20160628-161400.log,29.40 KB, text/plain)
2016-06-28 16:17 UTC, Toralf Förster
emerge-history.txt (emerge-history.txt,109.57 KB, text/plain)
2016-06-28 16:17 UTC, Toralf Förster
environment (environment,135.35 KB, text/plain)
2016-06-28 16:17 UTC, Toralf Förster

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Description Juergen Rose 2016-01-16 17:51:40 UTC
Created attachment 423068 [details]

'emerge pyzmq' fails with:
copying zmq/backend/cython/libzmq.pxd -> /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/lib/zmq/backend/cython
copying zmq/backend/cython/socket.pxd -> /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/lib/zmq/backend/cython
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
running configure
Settings obtained from pkg-config: {'libraries': ['zmq'], 'include_dirs': [], 'library_dirs': []}
{'runtime_library_dirs': [], 'library_dirs': [], 'extra_link_args': [], 'include_dirs': [], 'libraries': ['zmq']}
Configure: Autodetecting ZMQ settings...
    Custom ZMQ dir:       
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python/pyzmq-15.2.0
creating /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python/pyzmq-15.2.0/temp
cc -c /var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.c -o /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.o
/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
 main (int argc, char **argv) {
/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.c: In function ‘main’:
/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.c:2:5: warning: implicit declaration of function ‘timer_create’ [-Wimplicit-function-declaration]
cc /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.o -o /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/a.out
/var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/var/tmp/portage/dev-python/pyzmq-15.2.0/temp/timer_createmgrb31h2.o: In function `main':
timer_createmgrb31h2.c:(.text+0x15): undefined reference to `timer_create'
collect2: error: ld returned 1 exit status
creating var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4
creating var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4
creating var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch
x86_64-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -fPIC -Izmq/utils -Izmq/backend/cython -Izmq/devices -c /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/vers.c -o var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/vers.o
x86_64-pc-linux-gnu-gcc var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/vers.o -lzmq -lrt -o /var/tmp/portage/dev-python/pyzmq-15.2.0/work/pyzmq-15.2.0-python3_4/temp.linux-x86_64-3.4/scratch/vers
    ZMQ version detected: 4.1.3
failed to import Cython: dynamic module does not define init function (PyInit_Scanning)
error: Cython does not appear to be installed
 * ERROR: dev-python/pyzmq-15.2.0::gentoo failed (compile phase):
 *   (no error message)

root@impala:/root(18)# emerge --info '=dev-python/pyzmq-15.2.0::gentoo'
Portage 2.2.26 (python 2.7.11-final-0, default/linux/amd64/13.0, gcc-5.3.0, glibc-2.22-r1, 4.3.3-gentoo x86_64)
                         System Settings
System uname: Linux-4.3.3-gentoo-x86_64-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2
KiB Mem:     8163316 total,   2243504 free
KiB Swap:   50331640 total,  49706232 free
Timestamp of repository gentoo: Fri, 15 Jan 2016 00:00:01 +0000
sh bash 4.3_p42-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p42-r1::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.22.1::gentoo
dev-lang/python:          2.7.11-r2::gentoo, 3.4.3-r7::gentoo, 3.5.1-r2::gentoo
dev-util/cmake:           3.4.1::gentoo
dev-util/pkgconfig:       0.29::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.20::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r1::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo, 5.3.0::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r1::gentoo

    location: /usr/portage_impala
    sync-type: rsync
    sync-uri: rsync://
    priority: -1000

    location: /usr/local/portage
    masters: gentoo
    priority: 0

    location: /var/lib/cpan
    masters: gentoo
    priority: 1

    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo science
    priority: 50

    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 50

    location: /var/lib/layman/x11
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype- googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CFLAGS="-march=amdfam10 -O2 -pipe"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=amdfam10 -O2 -pipe"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
USE="3dnow 3dnowext 64bit R X Xaw3d a52 aac accessibility acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cilk cli cmake collada cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glib glpk gml gmp gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 ithreads jadetex java jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python q16 q32 qemu qhull qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl seccomp secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite sse sse2 sse4a ssl stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht texmacs theora thesaurus threads thunderbird tidy tiff tk tools truetype udev udisks unicode usb utempter v4l v4l2 vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext popcnt sse sse2 sse3 sse4a" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"

root@impala:/root(19)# emerge -pqv '=dev-python/pyzmq-15.2.0::gentoo'
[ebuild     U ] dev-python/pyzmq-15.2.0 [15.1.0] USE="doc examples {-test}" PYTHON_TARGETS="python2_7 python3_4 -python3_3 -python3_5"
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2016-02-09 13:15:01 UTC
I cannot reproduce this. Please try again with current version of the ebuild.
Comment 2 Dennis Schridde 2016-05-16 15:29:03 UTC
Is this still an issue?
Comment 3 Toralf Förster gentoo-dev 2016-06-28 16:17:13 UTC
Created attachment 439084 [details]

still an issue
Comment 4 Toralf Förster gentoo-dev 2016-06-28 16:17:20 UTC
Created attachment 439086 [details]
Comment 5 Toralf Förster gentoo-dev 2016-06-28 16:17:23 UTC
Created attachment 439088 [details]
Comment 6 Toralf Förster gentoo-dev 2016-06-28 16:17:26 UTC
Created attachment 439090 [details]
Comment 7 Mike Gilbert gentoo-dev 2016-06-28 22:25:54 UTC
(In reply to Toralf Förster from comment #3)
> Created attachment 439084 [details]
> emerge-info.txt
> still an issue

That's bug 583192.