>>> Compiling source in /var/tmp/portage/sci-biology/plink-1.90_pre140514/work ... make -j2 CXX=x86_64-pc-linux-gnu-g++ 'CFLAGS=-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native' 'ZLIB=-lz ' BLASFLAGS= x86_64-pc-linux-gnu-g++ -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native plink.c plink_assoc.c plink_calc.c plink_cluster.c plink_cnv.c plink_common.c plink_data.c plink_family.c plink_filter.c plin k_glm.c plink_help.c plink_homozyg.c plink_lasso.c plink_ld.c plink_matrix.c plink_misc.c plink_set.c plink_stats.c SFMT.c dcdflib.c pigz.c yarn.c -o plink -lm -lpthread -L. -lz ... /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccYOBhhu.o: In function `glm_linear_adapt_thread(void*)': plink_glm.c:(.text+0x61f3): undefined reference to `dgels_' plink_glm.c:(.text+0x65cb): undefined reference to `dgels_' plink_glm.c:(.text+0x6836): undefined reference to `dgels_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccYOBhhu.o: In function `glm_linear_maxt_thread(void*)': plink_glm.c:(.text+0x7344): undefined reference to `dgels_' plink_glm.c:(.text+0x7637): undefined reference to `dgels_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccYOBhhu.o:plink_glm.c:(.text+0x78ef): more undefined references to `dgels_' follow /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccRmTv4Q.o: In function `reml_em_one_trait(double*, double*, double*, double*, double, unsigned int)': plink_calc.c:(.text+0x8820): undefined reference to `cblas_dger' plink_calc.c:(.text+0x88bc): undefined reference to `cblas_dsymv' plink_calc.c:(.text+0x88f6): undefined reference to `cblas_dsymv' plink_calc.c:(.text+0x8910): undefined reference to `cblas_ddot' plink_calc.c:(.text+0x895a): undefined reference to `cblas_dsymv' plink_calc.c:(.text+0x8974): undefined reference to `cblas_ddot' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccRmTv4Q.o: In function `calc_pca(_IO_FILE*, unsigned long, char*, char*, unsigned long long, Rel_info*, unsigned long, unsigned long*, unsigned long, char*, unsigned long, unsigned long*, unsigned long, unsigned long*, unsigned long, unsigned long*, unsigned long, char*, unsigned long, double*, unsigned int, Chrom_info*, double*)': plink_calc.c:(.text+0x14410): undefined reference to `dsyevr_' plink_calc.c:(.text+0x145a6): undefined reference to `dsyevr_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccH7hKqw.o: In function `mds_plot(char*, char*, unsigned long*, unsigned long, unsigned int*, char*, unsigned int, unsigned int, unsigned long, unsigned int, unsigned int, unsigned int*, unsigned int*, unsigned int, unsigned int, unsigned int, double*)': plink_cluster.c:(.text+0x66ae): undefined reference to `dsyevr_' plink_cluster.c:(.text+0x68bd): undefined reference to `dsyevr_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccesFncY.o: In function `invert_matrix(int, double*, int*, double*)': plink_matrix.c:(.text+0x165a): undefined reference to `dgetrf_' plink_matrix.c:(.text+0x1679): undefined reference to `dgetri_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccesFncY.o: In function `invert_matrix_trunc_singular(int, double*, int*, double*, int)': plink_matrix.c:(.text+0x16ea): undefined reference to `dlange_' plink_matrix.c:(.text+0x1746): undefined reference to `dgetrf_' plink_matrix.c:(.text+0x17d7): undefined reference to `dgecon_' plink_matrix.c:(.text+0x180f): undefined reference to `dgetri_' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccesFncY.o: In function `col_major_matrix_multiply(int, int, int, double*, double*, double*)': plink_matrix.c:(.text+0x1882): undefined reference to `cblas_dgemm' /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccesFncY.o: In function `col_major_fmatrix_multiply(int, int, int, float*, float*, float*)': plink_matrix.c:(.text+0x18d2): undefined reference to `cblas_sgemm' collect2: error: ld returned 1 exit status Makefile:54: recipe for target 'plink' failed make: *** [plink] Error 1 * ERROR: sci-biology/plink-1.90_pre140514::gentoo failed (compile phase): * emake failed *
Created attachment 403748 [details] build.log
09 Jun 2015; Justin Lecher <jlec@gentoo.org> metadata.xml, plink-1.90_pre140514.ebuild: Fix build problems related to missing blas, bug #530670; bug #550142
