^ x86_64-pc-linux-gnu-gcc -fPIC -I../.. -I../../kernel/sources -I../../xgui/iconsXgui -march=native -O2 -pipe -c bn_bighop.c ar rc lib3d.a net_analyzer.o d3_xUtils.o d3_global.o d3_anageo.o d3_shade.o d3_lists.o d3_point.o d3_dither.o d3_zgraph.o d3_fonts.o d3_graph.o d3_draw.o d3_disp.o d3_move.o d3_zValue.o d3_setup.o d3_units.o d3_links.o d3_model.o d3_project.o d3_light.o d3_pannels.o d3_main.o bn_bignet.o bn_basics.o bn_art1.o bn_art2.o bn_artmap.o bn_TD_bignet.o bn_kohonen.o bn_assoz.o o_graph.o bn_JordElm.o ui_class.o bn_bighop.o x86_64-pc-linux-gnu-ranlib lib3d.a x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed libxgui1.a libxgui2.a lib3d.a \ -L/usr/lib64 -lXaw3d -lXmu -lXt -lXext -lSM -lICE -lX11 \ ../../kernel/sources/libkernel.a ../../kernel/sources/libfunc.a -lm -lfl -o xgui libxgui1.a(ui_controlP.o): In function `ui_rem_performPrunInit': ui_controlP.c:(.text+0x11d2): warning: the use of `tempnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3/xgui/sources' * python2_7: running distutils-r1_run_phase distutils-r1_python_compile /usr/bin/python2.7 setup.py build running build running build_py creating /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/lib creating /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/lib/snns copying snns/__init__.py -> /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/lib/snns copying snns/util.py -> /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/lib/snns warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'krui' extension creating /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/temp.linux-x86_64-2.7 creating /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/temp.linux-x86_64-2.7/snns x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe -fPIC -I../kernel/sources -I/usr/include/python2.7 -c snns/krui.c -o /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/temp.linux-x86_64-2.7/snns/krui.o snns/krui.c: In function ‘getNoOfFuncs’: snns/krui.c:2881:2: warning: passing argument 2 of ‘PyDict_Next’ from incompatible pointer type [enabled by default] while(PyDict_Next(funcdict, &i, &key, &value)) { ^ In file included from /usr/include/python2.7/Python.h:101:0, from snns/krui.c:16: /usr/include/python2.7/dictobject.h:114:17: note: expected ‘Py_ssize_t *’ but argument is of type ‘int *’ PyAPI_FUNC(int) PyDict_Next( ^ snns/krui.c:2883:3: warning: passing argument 2 of ‘PyDict_Next’ from incompatible pointer type [enabled by default] while(PyDict_Next(value, &j, &key2, &value2)) { ^ In file included from /usr/include/python2.7/Python.h:101:0, from snns/krui.c:16: /usr/include/python2.7/dictobject.h:114:17: note: expected ‘Py_ssize_t *’ but argument is of type ‘int *’ PyAPI_FUNC(int) PyDict_Next( ^ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=native -O2 -pipe /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/temp.linux-x86_64-2.7/snns/krui.o -L../kernel/sources -L/usr/lib64 -lkernel -lfunc -lfl -lpython2.7 -o /var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3-python2_7/lib/snns/krui.so >>> Source compiled. >>> Test phase [not enabled]: sci-mathematics/snns-4.3-r1 >>> Install snns-4.3-r1 into /var/tmp/portage/sci-mathematics/snns-4.3-r1/image/ category sci-mathematics find: invalid mode ‘+100’ mv: cannot stat ‘/var/tmp/portage/sci-mathematics/snns-4.3-r1/image//usr/bin/netperf’: No such file or directory * ERROR: sci-mathematics/snns-4.3-r1::gentoo failed (install phase): * (no error message) * * Call stack: * ebuild.sh, line 93: Called src_install * environment, line 3798: Called die * The specific snippet of code: * mv "${ED}"/usr/bin/{,snns-}netperf || die; * * If you need support, post the output of `emerge --info '=sci-mathematics/snns-4.3-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/snns-4.3-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-mathematics:snns-4.3-r1:20150414-012222.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/snns-4.3-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/snns-4.3-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3' * S: '/var/tmp/portage/sci-mathematics/snns-4.3-r1/work/SNNSv4.3' The log is stored in /var/log/portage/_emerge_20150414-032304.log. quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=sci-mathematics%2Fsnns maintainer : axs@gentoo.org herd : sci-mathematics This is an unstable amd64 chroot image (named amd64-unstable-libtool_20150410) at a hardened host acting as a tinderbox. Portage 2.2.14 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/kde, gcc-4.8.4, glibc-2.20-r2, 3.19.3-hardened-r1 x86_64) ================================================================= System uname: Linux-3.19.3-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164756 total, 3293132 free KiB Swap: 16777212 total, 16682072 free Timestamp of tree: Mon, 13 Apr 2015 13:00:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p53 dev-java/java-config: 2.2.0 dev-lang/perl: 5.20.2 dev-lang/python: 2.7.9-r2, 3.3.5-r1 dev-util/pkgconfig: 0.28-r2 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.13.11 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69-r1 sys-devel/automake: 1.9.6-r4, 1.10.3-r1, 1.11.6-r1, 1.12.6, 1.13.4, 1.15 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.4 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.6-r1 sys-devel/make: 4.1-r1 sys-kernel/linux-headers: 3.18 (virtual/os-headers) sys-libs/glibc: 2.20-r2 Repositories: 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Created attachment 401234 [details] emerge log
Thanks for reporting -- I'll look into why you're seeing this failure immediately. The only reason I can think of off-hand would be that the 'netperf' binary isn't being created, but during my tests it always was..
At the point that this emerge failed, was there anything at all installed in /var/tmp/portage/sci-mathematics/snns-4.3-r1/image/usr/bin/ ?? There should have been at least a dozen utilities, including 'netperf'. I have a funny feeling that the means these tools are being detected and fed to 'dobin' might be invalid...
(In reply to Ian Stakenvicius from comment #2) > Thanks for reporting -- I'll look into why you're seeing this failure > immediately. The only reason I can think of off-hand would be that the > 'netperf' binary isn't being created, but during my tests it always was.. tor-relay / # equery b /usr/bin/netperf * Searching for /usr/bin/netperf ... net-analyzer/netperf-2.6.0-r1 (/usr/bin/netperf) >was there anything at all installed in /var/tmp/portage/sci-mathematics/snns-4.3-r1/image/usr/bin/ ?? Sry - it is a tinderbox and such dirs are cleaned to keep space - but I can stop that chroot image and try to manually run comamnds, if you tell me, which I should run.
(In reply to Toralf Förster from comment #4) > (In reply to Ian Stakenvicius from comment #2) > > Thanks for reporting -- I'll look into why you're seeing this failure > > immediately. The only reason I can think of off-hand would be that the > > 'netperf' binary isn't being created, but during my tests it always was.. > tor-relay / # equery b /usr/bin/netperf > * Searching for /usr/bin/netperf ... > net-analyzer/netperf-2.6.0-r1 (/usr/bin/netperf) > that's why the mv command is there in the first place, so that snns doesn't collide with net-analyzer/netperf. > > was there anything at all installed in /var/tmp/portage/sci-mathematics/snns-4.3-r1/image/usr/bin/ ?? > Sry - it is a tinderbox and such dirs are cleaned to keep space - but I can > stop that chroot image and try to manually run comamnds, if you tell me, > which I should run. Don't worry about it -- I didn't like the way the ebuild was installing binaries anyhow, so I reworked it by patching the build system and using emake install. + 14 Apr 2015; Ian Stakenvicius (_AxS_) <axs@gentoo.org> + +files/4.3-snns-netperf.patch, +snns-4.3-r2.ebuild, -snns-4.3-r1.ebuild: + Reworked the solution for the netperf collision, dropped the 'find all + executable files' method of installing tools for 'emake install', added + missing deps; resolves bug 546566
