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Bug 546000 - dev-python/statsmodels-0.6.1 - VersionConflict: (docutils 0.9.1 (/usr/lib64/python2.7/site-packages), Requirement.parse('docutils>=0.11'))
Summary: dev-python/statsmodels-0.6.1 - VersionConflict: (docutils 0.9.1 (/usr/lib64/p...
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-04-08 20:49 UTC by Juergen Rose
Modified: 2015-04-09 16:14 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,265.23 KB, text/plain)
2015-04-08 20:49 UTC, Juergen Rose
Details

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Description Juergen Rose 2015-04-08 20:49:05 UTC
Created attachment 400868 [details]
build.log

'MAKEOPTS=-j1 emerge -v1 statsmodels' fails with:
...
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^
x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6 /var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/temp.linux-x86_64-2.7/statsmodels/nonparametric/linbin.o -L/usr/lib64 -lpython2.7 -o /var/tmp/portage/dev-python/statsmodels-0.6.1/work/statsmodels-0.6.1-python2_7/lib/statsmodels/nonparametric/linbin.so
 * python2_7: running distutils-r1_run_phase python_compile_all
Traceback (most recent call last):
  File "setup.py", line 449, in <module>
    **setuptools_kwargs)
  File "/usr/lib64/python2.7/distutils/core.py", line 137, in setup
    ok = dist.parse_command_line()
  File "/usr/lib64/python2.7/site-packages/setuptools/dist.py", line 296, in parse_command_line
    result = _Distribution.parse_command_line(self)
  File "/usr/lib64/python2.7/distutils/dist.py", line 467, in parse_command_line
    args = self._parse_command_opts(parser, args)
  File "/usr/lib64/python2.7/site-packages/setuptools/dist.py", line 598, in _parse_command_opts
    nargs = _Distribution._parse_command_opts(self, parser, args)
  File "/usr/lib64/python2.7/distutils/dist.py", line 523, in _parse_command_opts
    cmd_class = self.get_command_class(command)
  File "/usr/lib64/python2.7/site-packages/setuptools/dist.py", line 426, in get_command_class
    ep.require(installer=self.fetch_build_egg)
  File "/usr/lib64/python2.7/site-packages/pkg_resources/__init__.py", line 2355, in require
    items = working_set.resolve(reqs, env, installer)
  File "/usr/lib64/python2.7/site-packages/pkg_resources/__init__.py", line 832, in resolve
    raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.VersionConflict: (docutils 0.9.1 (/usr/lib64/python2.7/site-packages), Requirement.parse('docutils>=0.11'))
 * ERROR: dev-python/statsmodels-0.6.1::gentoo failed (compile phase):




root@gepard:/root(7)# emerge --info '=dev-python/statsmodels-0.6.1::gentoo'
Portage 2.2.18 (python 2.7.9-final-0, default/linux/amd64/13.0/desktop/gnome/systemd, gcc-4.9.2, glibc-2.20-r2, 3.19.3-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.19.3-gentoo-x86_64-Intel-R-_Core-TM-_i7_CPU_M_620_@_2.67GHz-with-gentoo-2.2
KiB Mem:     8023192 total,    938380 free
KiB Swap:   12582908 total,  12446928 free
Timestamp of repository gentoo: Wed, 08 Apr 2015 07:00:01 +0000
sh bash 4.3_p33-r2
ld GNU ld (Gentoo 2.25 p1.0) 2.25
distcc[13664] (dcc_trace_version) distcc 3.2rc1 x86_64-pc-linux-gnu; built Feb 28 2015 11:22:32 [disabled]
app-shells/bash:          4.3_p33-r2::gentoo
dev-java/java-config:     2.2.0::gentoo
dev-lang/perl:            5.20.2::gentoo
dev-lang/python:          2.7.9-r2::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo
dev-util/cmake:           3.1.0::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.13.11::gentoo
sys-apps/sandbox:         2.6-r1::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo
sys-devel/automake:       1.9.6-r4::gentoo, 1.10.3-r1::gentoo, 1.11.6-r1::gentoo, 1.12.6::gentoo, 1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25::gentoo
sys-devel/gcc:            4.9.2::gentoo
sys-devel/gcc-config:     1.8::gentoo
sys-devel/libtool:        2.4.6-r1::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 3.19::gentoo (virtual/os-headers)
sys-libs/glibc:           2.20-r2::gentoo
Repositories:

gentoo
    location: /usr/portage_gepard
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

sage-on-gentoo
    location: /var/lib/layman/sage-on-gentoo
    masters: gentoo
    priority: 0

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 1

sunrise
    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 2

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 3

ago
    location: /var/lib/layman/ago
    masters: gentoo
    priority: 4

tlp
    location: /var/lib/layman/tlp
    masters: gentoo
    priority: 5

local
    location: /usr/local/portage
    masters: gentoo
    priority: 6

g-cpan
    location: /var/lib/cpan
    masters: gentoo
    priority: 7

g-octave
    location: /var/lib/g-octave
    masters: gentoo
    priority: 8

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=core2 -mtune=generic -Os -pipe -msse3 -msse4 -mcx16 -msahf -mpopcnt -mpreferred-stack-boundary=6"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli cmake colord cracklib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx fuse g3dvl garmin gcj gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnome-online-accounts gnome-print gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hdaps hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jabber jadetex java java6 jbig jit john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack laptop latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libsecret lirc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mkl mmx mmxext mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds preview-latex proj projectm pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session shout sip slang slp smart smbclient smp sms sndfile snmp soap socialweb sockets sound soup sox speex spell sql sqlite sse sse2 sse3 sse4 sse4_1 sse4_2 ssl ssse3 startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tcl tcpd tex tex4ht texmacs theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video virt-network virtualbox visio vorbis vpx vtk wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xa xattr xcb xetex xext xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="nss" DRACUT_MODULES="caps lvm syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de fr ru" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON





root@gepard:/root(8)# emerge -pqv '=dev-python/statsmodels-0.6.1::gentoo'
[ebuild  N    ] dev-python/statsmodels-0.6.1  USE="doc examples {-test}" PYTHON_TARGETS="python2_7 python3_3 -python3_4"