Created attachment 397754 [details] emerge log >>> Verifying ebuild manifests >>> Emerging (1 of 1) sci-biology/njplot-2.3 >>> Failed to emerge sci-biology/njplot-2.3, Log file: >>> '/var/log/portage/sci-biology:njplot-2.3:20150301-060913.log' * Package: sci-biology/njplot-2.3 * Repository: gentoo * Maintainer: sci-biology@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux policykit userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe -c -DWIN_MOTIF -Dunix -I/usr/include/ncbi/include -I/usr/include/ncbi/vibrant -I/usr/include/ncbi/corelib -I/usr/include/ncbi -I -I/usr/X11R6/include -I/sw/include -DHELPFILENAME=\"/usr/share/njplot/njplot.help\" -DNO_PDF -Wimplicit-function-declaration -g njplot-vib.c njplot-vib.c: In function ‘process_args’: njplot-vib.c:1979:3: warning: format not a string literal and no format arguments [-Wformat-security] message); ^ x86_64-pc-linux-gnu-gcc -g -o njplot njplot-vib.o \ -L/usr/include/ncbi/lib \ -lvibrant -lncbi \ \ -L/sw/lib -lXm \ -L/usr/X11R6/lib -lXmu -lXt -lX11 -lm /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lvibrant /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lncbi njplot-vib.o: In function `paste_tree': /var/tmp/portage/sci-biology/njplot-2.3/work/njplot-2.3/njplot-vib.c:1550: warning: the use of `tempnam' is dangerous, better use `mkstemp' collect2: error: ld returned 1 exit status makefile:35: recipe for target 'njplot' failed make: *** [njplot] Error 1 emake failed * ERROR: sci-biology/njplot-2.3::gentoo failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 93: Called src_compile * environment, line 741: Called __eapi2_src_compile * phase-helpers.sh, line 695: Called die * The specific snippet of code: * emake || die "emake failed" * * If you need support, post the output of `emerge --info '=sci-biology/njplot-2.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-biology/njplot-2.3::gentoo'`. * The complete build log is located at '/var/log/portage/sci-biology:njplot-2.3:20150301-060913.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-biology/njplot-2.3/temp/environment'. * Working directory: '/var/tmp/portage/sci-biology/njplot-2.3/work/njplot-2.3' * S: '/var/tmp/portage/sci-biology/njplot-2.3/work/njplot-2.3' This is a amd64 unstable chroot build bot image named amd64-unstable at a hardened host. Portage 2.2.8-r2 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.3, glibc-2.19-r1, 3.18.7-hardened-r1 x86_64) ================================================================= System uname: Linux-3.18.7-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16164808 total, 1225232 free KiB Swap: 16777212 total, 16737568 free Timestamp of tree: Sun, 01 Mar 2015 00:00:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.3_p33-r1 dev-lang/perl: 5.20.2 dev-lang/python: 2.7.9-r2, 3.3.5-r1, 3.4.1 dev-util/cmake: 3.1.0 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.9.6-r4, 1.11.6-r1, 1.12.6, 1.13.4 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.6 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.16 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/qpsmtpd/plugins /var/spool/torque /var/yp/Makefile" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --quiet --deep --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" USE="X a52 aac acl acpi aes-ni alsa amd64 apache2 avx avx2 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit corefonts cracklib crypt cups cxx dbus declarative dnssec doc dri drmkms dts dvd dvdr ecc emboss encode exif extraengine fam ffmpeg firefox flac fontconfig fortran fpm gd gdbm gif glamor gpm gtk gudev gui iconv icu isag jpeg kde kipi lapack lcms libav libnotify libvirtd logrotate macvtap mad mbox minizip mmx mng modules mp3 mp4 mpeg multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pango pax_kernel pcre pdf phonon plasma png policykit ppds python qemu qt3support qt4 qt5 readline sdl session spell spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 startup-notification svg tcpd theora thinkpad threads tiff tk tls truetype udev udisks uml unicode upower usb usbredir uxa v4l v4l2 video vorbis wxwidgets x264 xa xcb xcomposite xinerama xml xmp xscreensaver xv xvfb xvid xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 s irf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
*** This bug has been marked as a duplicate of bug 425710 ***
