>>> Emerging (1 of 1) dev-python/pytables-3.0.0 * tables-3.0.0.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking tables-3.0.0.tar.gz to /var/tmp/portage/dev-python/pytables-3.0.0/work >>> Source unpacked in /var/tmp/portage/dev-python/pytables-3.0.0/work >>> Preparing source in /var/tmp/portage/dev-python/pytables-3.0.0/work/tables-3.0.0 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/pytables-3.0.0/work/tables-3.0.0 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/pytables-3.0.0/work/tables-3.0.0 ... * python3_3: running distutils-r1_run_phase distutils-r1_python_compile /usr/bin/python3.3 setup.py build * Using Python 3.3.5 (default, Aug 20 2014, 08:15:09) * Found numpy 1.8.0 package installed. * Found numexpr 2.2.2 package installed. .. ERROR:: You need Cython 0.13 or greater to compile PyTables! Reproducible: Always Steps to Reproduce: 1. emerge cython 2. emerge pytables 3. Actual Results: error Expected Results: no error
Portage 2.2.8-r2 (default/linux/amd64/13.0/desktop/kde/systemd, gcc-4.7.3, glibc-2.19-r1, 3.16.5-gentoo x86_64) ================================================================= System uname: Linux-3.16.5-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5440_@_2.83GHz-with-gentoo-2.2 KiB Mem: 8156676 total, 2685384 free KiB Swap: 524284 total, 524284 free Timestamp of tree: Mon, 24 Nov 2014 04:00:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p53 dev-java/java-config: 2.2.0 dev-lang/perl: 5.18.2-r2 dev-lang/python: 2.7.7, 3.3.5-r1, 3.4.1 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.10.3, 1.11.6, 1.12.6, 1.13.4 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.6.3, 4.7.3-r1, 4.8.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.3-r2 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.16 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: 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winbind windeco wininst winpopup wma wma-fixed wmf wordperfect wrappers wxwidgets wxwindows x264 xa xanim xbase xcap xcb xchatdccserver xcomposite xdm-auth xemacs xembed xerces-c xetex xext xface xforms xforward xfs xft xgetdefault xindy xine xinerama xinetd xkb xlib-xcb xls xml xmldoclet xmlpatterns xmlreader xmlrpc xmlwriter xmp xmpp xnest xorg xorgmodule xosd xpdf-headers xpm xrandr xrender xscreensaver xsl xslt xterm xulrunner xv xvfb xvid xvmc xz yahoo yahoo-geo yasim yaz youtube yp yv12 zeroconf zip zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="emu10k1 emu10k1x" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif 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python3_3" QEMU_SOFTMMU_TARGETS="arm aarch64" QEMU_USER_TARGETS="arm aarch64" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="dummy v4l nv nvidia nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
[ebuild R ] dev-python/cython-0.21 USE="-doc {-test}" PYTHON_TARGETS="python2_7 python3_3 (-pypy) -python3_4" 0 kB
Seen that before on my cluster in pytables-2.4.0. cython changed a little things to be more standard compliant and it breaks all older python packages checking the cython version. From setup.py in tables-2.4.0: # Check if Cython is installed or not (requisite) try: from Cython.Distutils import build_ext from Cython.Compiler.Main import Version cmdclass = {'build_ext': build_ext} except: exit_with_error( "You need %(pkgname)s %(pkgver)s or greater to compile PyTables!" % {'pkgname': 'Cython', 'pkgver': min_cython_version} ) The problem is "from Cython.Compiler.Main import Version" Version needs to be "version" all lower case.
Just upgrade to Cython 0.21.1.
(In reply to Arfrever Frehtes Taifersar Arahesis from comment #4) > Just upgrade to Cython 0.21.1. this works for me - thanks! :)
Same there. Any hope for resolving? dev-python/cython Installed versions: 0.21 .. ERROR:: You need Cython 0.13 or greater to compile PyTables! * ERROR: dev-python/pytables-3.0.0::gentoo failed (compile phase): * (no error message)
Sorry, didnt see comment about cython 0.21.1 first. Still, it would be nice to either fit this or make cython-0.21.1 stable
amd64/ppc/ppc64/x86 stable
Stable for HPPA.
arm stable
alpha stable
ia64 stable
sparc stable, closing
