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Bug 529672 - =dev-db/oracle-instantclient-basic-11.2.0.3 preserves /lib32/libaio.so.1.0.1
Summary: =dev-db/oracle-instantclient-basic-11.2.0.3 preserves /lib32/libaio.so.1.0.1
Status: RESOLVED DUPLICATE of bug 524924
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Michael Haubenwallner (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-11-18 09:49 UTC by Mark Dominik Bürkle
Modified: 2014-12-09 08:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Mark Dominik Bürkle 2014-11-18 09:49:44 UTC
!!! existing preserved libs:
>>> package: dev-libs/libaio-0.3.110
 *  - /lib32/libaio.so.1
 *  - /lib32/libaio.so.1.0.1
 *      used by /usr/lib64/oracle/11.2.0.3/client/lib32/libclntsh.so.11.1 (dev-db/oracle-instantclient-basic-11.2.0.3)
Use emerge @preserved-rebuild to rebuild packages using these libraries


Reproducible: Didn't try

Steps to Reproduce:
Not sure how to reproduce, installed oracle-instantclient a while ago...
1. emerge =dev-db/oracle-instantclient-basic-11.2.0.3
2. do some updates, get complaints about oracle-instantclient-basic using preserved libs
3. emerge @preserved-rebuild # does not change anything
Actual Results:  
emerge complains about preserved libs:

...
 * GNU info directory index is up-to-date.

!!! existing preserved libs:
>>> package: dev-libs/libaio-0.3.110
 *  - /lib32/libaio.so.1
 *  - /lib32/libaio.so.1.0.1
 *      used by /usr/lib64/oracle/11.2.0.3/client/lib32/libclntsh.so.11.1 (dev-db/oracle-instantclient-basic-11.2.0.3)
Use emerge @preserved-rebuild to rebuild packages using these libraries


Expected Results:  
?

Maybe because libaio has had its "multilib" USE flag dropped in 0.3.110?
Do I have to use ABI_X86="64 32" or USE="abi_x86_32 abi_x86_64" for libaio?

Stabilization of oracle-instantclient-basic-11.2.0.4 might be a solution to this.


lapmdb-hpl ~ #>> emerge --info =dev-db/oracle-instantclient-basic-11.2.0.3
Portage 2.2.8-r2 (default/linux/amd64/13.0/desktop/gnome/systemd, gcc-4.8.3, glibc-2.19-r1, 3.17.3-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.17.3-gentoo-x86_64-Intel-R-_Core-TM-_i5-2430M_CPU_@_2.40GHz-with-gentoo-2.2
KiB Mem:     6052004 total,   1816464 free
KiB Swap:   10485756 total,  10236768 free
Timestamp of tree: Sat, 15 Nov 2014 19:45:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.2_p53
dev-java/java-config:     2.2.0
dev-lang/perl:            5.18.2-r2
dev-lang/python:          2.7.7, 3.3.5-r1, 3.4.1
dev-util/cmake:           2.8.12.2-r1
dev-util/pkgconfig:       0.28-r1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6-r1, 1.13.4
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2-r1
sys-devel/make:           4.0-r1
sys-kernel/linux-headers: 3.16 (virtual/os-headers)
sys-libs/glibc:           2.19-r1
Repositories: gentoo java local
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=core2 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS=" http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://www.ibiblio.org/pub/Linux/distributions/gentoo http://distfiles.gentoo.org"
LANG="de_DE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/java /usr/local/portage"
SYNC="rsync://mirror.wheel.sk/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 avx berkdb bluetooth branding bzip2 cairo cdda cddb cdinstall cdparanoia cdr cgi cli colord cracklib crypt css cups cxx dbus dedicated dga dri dts dvd dvdr eds emboss encode evo exif fam fastcgi firefox flac fortran gdbm gif glamor glut gnome gnome-keyring gnome-online-accounts gnutls gpm gsm gstreamer gtk gzip hddtemp iconv idn introspection ipv6 java java6 javascript jpeg jpeg2k kerberos lame lash lcms ldap libnotify libsecret lm_sensors mad matroska mbox mikmod mime mmap mms mmx mng mod modules mp3 mp4 mpeg mplayer multilib musepack nautilus ncurses nls nptl nsplugin ogg openal openexr opengl openmp pam pango pcre pdf perl php png policykit posix ppds pulseaudio qt3support qt4 quicktime raw rdesktop readline recode samba sasl savedconfig sdl session sharedmem simplexml smp socialweb sound spell sse sse2 ssl startup-notification subversion svg symlink syslog systemd sysvipc tcl tcmalloc tcpd theora tiff tokenizer truetype udev udisks unicode upower usb vcd videos vim-syntax vnc vorbis wavpack wayland wifi win32codecs wmf wxwidgets x264 xcb xcomposite xml xosd xsl xulrunner xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="prefork" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en fr" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3 pypy1_9 jython2_5" QEMU_SOFTMMU_TARGETS="arm" QEMU_USER_TARGETS="arm armeb" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="intel radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

=================================================================
                        Package Settings
=================================================================

dev-db/oracle-instantclient-basic-11.2.0.3 was built with the following:
USE="multilib" ABI_X86="64"

lapmdb-hpl ~ #>>
Comment 1 Michael Haubenwallner (RETIRED) gentoo-dev 2014-11-18 15:20:31 UTC
Although not marked stable yet, dev-db/oracle-instantclient-basic-11.2.0.4 should not have this problem any more.

Could you try this please?

$ ACCEPT_KEYWORDS='~amd64' emerge -av1 oracle-instantclient-basic
Comment 2 Mark Dominik Bürkle 2014-11-18 16:41:10 UTC
lapmdb-hpl ~ #>> ACCEPT_KEYWORDS='~amd64' emerge -av1 oracle-instantclient-basic

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   Rf   ] dev-db/oracle-instantclient-basic-11.2.0.3  USE="multilib" 0 kB

Total: 1 package (1 reinstall), Size of downloads: 0 kB
Fetch Restriction: 1 package

WARNING: One or more updates have been skipped due to a dependency conflict:

dev-db/oracle-instantclient-basic:0

  (dev-db/oracle-instantclient-basic-11.2.0.4::gentoo, ebuild scheduled for merge) conflicts with
    ~dev-db/oracle-instantclient-basic-11.2.0.3 required by (dev-db/oracle-instantclient-sqlplus-11.2.0.3-r1::gentoo, installed)


Would you like to merge these packages? [Yes/No] no

Quitting.

lapmdb-hpl ~ #>> vi /etc/portage/package.keywords 
lapmdb-hpl ~ #>> grep -B1 oracle /etc/portage/package.keywords 
# for trying update 11.2.0.3 (preserves libaio.so.1.0.1)
=dev-db/oracle-instantclient-basic-11.2.0.4 ~amd64
lapmdb-hpl ~ #>> emerge -av @preserved-rebuild

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   Rf   ] dev-db/oracle-instantclient-basic-11.2.0.3  USE="multilib" 0 kB

Total: 1 package (1 reinstall), Size of downloads: 0 kB
Fetch Restriction: 1 package

WARNING: One or more updates have been skipped due to a dependency conflict:

dev-db/oracle-instantclient-basic:0

  (dev-db/oracle-instantclient-basic-11.2.0.4::gentoo, ebuild scheduled for merge) conflicts with
    ~dev-db/oracle-instantclient-basic-11.2.0.3 required by (dev-db/oracle-instantclient-sqlplus-11.2.0.3-r1::gentoo, installed)


Would you like to merge these packages? [Yes/No] no

Quitting.

lapmdb-hpl ~ #>> emerge -C oracle-instantclient-basic
 * This action can remove important packages! In order to be safer, use
 * `emerge -pv --depclean <atom>` to check for reverse dependencies before
 * removing packages.

 dev-db/oracle-instantclient-basic
    selected: 11.2.0.3 
   protected: none 
     omitted: none 

All selected packages: dev-db/oracle-instantclient-basic-11.2.0.3

>>> 'Selected' packages are slated for removal.
>>> 'Protected' and 'omitted' packages will not be removed.

>>> Waiting 5 seconds before starting...
>>> (Control-C to abort)...
>>> Unmerging in: 5 4 3 2 1
>>> Unmerging (1 of 1) dev-db/oracle-instantclient-basic-11.2.0.3...
>>> needed   obj /usr/lib64/oracle/11.2.0.3/client/lib64/libclntsh.so.11.1
<<< !needed  sym /lib32/libaio.so.1
<<< !needed  obj /lib32/libaio.so.1.0.1
 * 
 * Directory symlink(s) may need protection:
 * 
 * 	/usr/lib64/oracle/11.2.0.3/client/lib
 * 
 * Searching all installed packages for files installed via above symlink(s)...
 * 
 * The above directory symlink(s) are all safe to remove. Removing them now...
 * 
<<< !needed  obj /usr/lib64/oracle/11.2.0.3/client/lib64/libclntsh.so.11.1

 * Messages for package dev-db/oracle-instantclient-basic-11.2.0.3:

 * 
 * Directory symlink(s) may need protection:
 * 
 * 	/usr/lib64/oracle/11.2.0.3/client/lib
 * 
 * Searching all installed packages for files installed via above symlink(s)...
 * 
 * The above directory symlink(s) are all safe to remove. Removing them now...
 * 

 * GNU info directory index is up-to-date.
lapmdb-hpl ~ #>> emerge -av1 oracle-instantclient-basic

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N F  ~] dev-db/oracle-instantclient-basic-11.2.0.4  ABI_X86="(64) -32 (-x32)" 59,910 kB

Total: 1 package (1 new), Size of downloads: 59,910 kB
Fetch Restriction: 1 package (1 unsatisfied)

Fetch instructions for dev-db/oracle-instantclient-basic-11.2.0.4:
 * Please go to
 *   http://www.oracle.com/technetwork/database/features/instant-client/index-097480.html
 *   and download
 * Instant Client for Linux x86-64
 *     Basic: (still absent) instantclient-basic-linux.x64-11.2.0.4.0.zip
 *     SDK:   (still absent) instantclient-sdk-linux.x64-11.2.0.4.0.zip
 * After downloading these files (for *all* shown architectures), put them in:
 *     /usr/portage/distfiles/

Would you like to merge these packages? [Yes/No] 

>>> Verifying ebuild manifests

>>> Emerging (1 of 1) dev-db/oracle-instantclient-basic-11.2.0.4
 * instantclient-basic-linux.x64-11.2.0.4.0.zip SHA256 SHA512 WHIRLPOOL size ;-) ...                                                          [ ok ]
 * instantclient-sdk-linux.x64-11.2.0.4.0.zip SHA256 SHA512 WHIRLPOOL size ;-) ...                                                            [ ok ]
>>> Unpacking source...
>>> Unpacking instantclient-basic-linux.x64-11.2.0.4.0.zip to /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/work/amd64
error:  cannot open zipfile [ /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/instantclient-basic-linux.x64-11.2.0.4.0.zip ]
        Permission denied
unzip:  cannot find or open /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/instantclient-basic-linux.x64-11.2.0.4.0.zip, /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/instantclient-basic-linux.x64-11.2.0.4.0.zip.zip or /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/instantclient-basic-linux.x64-11.2.0.4.0.zip.ZIP.
 * ERROR: dev-db/oracle-instantclient-basic-11.2.0.4::gentoo failed (unpack phase):
 *   failure unpacking instantclient-basic-linux.x64-11.2.0.4.0.zip
 * 
 * Call stack:
 *          ebuild.sh, line   93:  Called src_unpack
 *        environment, line 2622:  Called unpack 'instantclient-basic-linux.x64-11.2.0.4.0.zip'
 *   phase-helpers.sh, line  348:  Called die
 * The specific snippet of code:
 *   				( set +x ; while true ; do echo n || break ; done ) | \
 *   				unzip -qo "${srcdir}${x}" || die "$myfail"
 * 
 * If you need support, post the output of `emerge --info '=dev-db/oracle-instantclient-basic-11.2.0.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-db/oracle-instantclient-basic-11.2.0.4::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/work/amd64'
 * S: '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/work/amd64/instantclient_11_2'

>>> Failed to emerge dev-db/oracle-instantclient-basic-11.2.0.4, Log file:

>>>  '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/temp/build.log'

 * Messages for package dev-db/oracle-instantclient-basic-11.2.0.4:

 * Please go to
 *   http://www.oracle.com/technetwork/database/features/instant-client/index-097480.html
 *   and download
 * Instant Client for Linux x86-64
 *     Basic: (still absent) instantclient-basic-linux.x64-11.2.0.4.0.zip
 *     SDK:   (still absent) instantclient-sdk-linux.x64-11.2.0.4.0.zip
 * After downloading these files (for *all* shown architectures), put them in:
 *     /usr/portage/distfiles/

 * Messages for package dev-db/oracle-instantclient-basic-11.2.0.4:

 * ERROR: dev-db/oracle-instantclient-basic-11.2.0.4::gentoo failed (unpack phase):
 *   failure unpacking instantclient-basic-linux.x64-11.2.0.4.0.zip
 * 
 * Call stack:
 *          ebuild.sh, line   93:  Called src_unpack
 *        environment, line 2622:  Called unpack 'instantclient-basic-linux.x64-11.2.0.4.0.zip'
 *   phase-helpers.sh, line  348:  Called die
 * The specific snippet of code:
 *   				( set +x ; while true ; do echo n || break ; done ) | \
 *   				unzip -qo "${srcdir}${x}" || die "$myfail"
 * 
 * If you need support, post the output of `emerge --info '=dev-db/oracle-instantclient-basic-11.2.0.4::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-db/oracle-instantclient-basic-11.2.0.4::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/work/amd64'
 * S: '/var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/work/amd64/instantclient_11_2'
lapmdb-hpl ~ #>> 



11.2.0.4 looks untested to me.
Please update the ebuild.
Comment 3 Mark Dominik Bürkle 2014-11-18 21:24:16 UTC
Ups! Don't know how those permissions materialized - downloaded with chromium and saved directly to /usr/portage/distfiles/ (mode 0775 and user mdb has groups=portage), normally saved files have umask-022-ed permissions...


lapmdb-hpl ~ #>> l /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/ -L
insgesamt 59936
drwxr-xr-x 2 root    portage     4096 18. Nov 17:37 ./
drwxrwxr-x 6 portage portage     4096 18. Nov 17:37 ../
-rw-r----- 1 mdb     mdb     60704657 18. Nov 17:36 instantclient-basic-linux.x64-11.2.0.4.0.zip
-rw-r----- 1 mdb     mdb       643089 18. Nov 17:37 instantclient-sdk-linux.x64-11.2.0.4.0.zip
lapmdb-hpl ~ #>> chmod o+r /var/tmp/portage/dev-db/oracle-instantclient-basic-11.2.0.4/distdir/instantclient-*
lapmdb-hpl ~ #>> emerge -av1 oracle-instantclient-basic

These are the packages that would be merged, in order:

Calculating dependencies |
... done!
[ebuild  N f  ~] dev-db/oracle-instantclient-basic-11.2.0.4  ABI_X86="(64) -32 (-x32)" 0 kB

Total: 1 package (1 new), Size of downloads: 0 kB
Fetch Restriction: 1 package

Would you like to merge these packages? [Yes/No] 
>>> Verifying ebuild manifests

>>> Emerging (1 of 1) dev-db/oracle-instantclient-basic-11.2.0.4
...

lapmdb-hpl ~ #>>
Comment 4 Mark Dominik Bürkle 2014-12-06 12:17:38 UTC
(In reply to Michael Haubenwallner from comment #1)
> Although not marked stable yet, dev-db/oracle-instantclient-basic-11.2.0.4
> should not have this problem any more.
> 
> Could you try this please?
> 
> $ ACCEPT_KEYWORDS='~amd64' emerge -av1 oracle-instantclient-basic


The mentioned preserved libs have been removed from the system by portage upon merging dev-db/oracle-instantclient-basic-11.2.0.4.

Thanks!

Kind regards,
Mark Dominik Bürkle
Comment 5 Michael Haubenwallner (RETIRED) gentoo-dev 2014-12-09 08:12:40 UTC
Ok, thank!

*** This bug has been marked as a duplicate of bug 524924 ***