Compilation is fine, but the install fails: * Detected file collision(s): * * /usr/lib/debug/usr/bin/join.debug * /usr/bin/join * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * sys-apps/coreutils-8.21:0::gentoo * /usr/bin/join * /usr/lib/debug/usr/bin/join.debug * * Package 'sci-biology/seqan-1.4.2' NOT merged due to file collisions. * If necessary, refer to your elog messages for the whole content of the * above message. Reproducible: Always Steps to Reproduce: 1. emerge -uv sci-biology/seqan 2. wait for merge 3. see the file collision Actual Results: Tries to install a file /usr/bin/join colliding with coreutils' join Expected Results: Maybe move/rename the 'join' binary into something less sensitive... I will also fill a bug upstream.
Created attachment 387264 [details] sci-biology:seqan-1.4.2:20141023-130902.log.gz
+ 24 Oct 2014; Justin Lecher <jlec@gentoo.org> seqan-1.4.2.ebuild: + Fix file collision, #526586 + Thanks for bringing it upstream, I will track it there too.
