libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -c /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/common.cc -fPIC -DPIC -o .libs/common.o In file included from /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.cc:4:0: /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:17:2: error: #error This file was generated by an older version of protoc which is #error This file was generated by an older version of protoc which is ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please #error incompatible with your Protocol Buffer headers. Please ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. #error regenerate this file with a newer version of protoc. ^ In file included from /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.h:31:0, from /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.cc:48: /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:17:2: error: #error This file was generated by an older version of protoc which is #error This file was generated by an older version of protoc which is ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please #error incompatible with your Protocol Buffer headers. Please ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. #error regenerate this file with a newer version of protoc. ^ /bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -c -o Reads.lo `test -f 'goby/Reads.cc' || echo '/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/'`goby/Reads.cc libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -c /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.cc -fPIC -DPIC -o .libs/Reads.o In file included from /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.h:30:0, from /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.cc:32: /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.pb.h:17:2: error: #error This file was generated by an older version of protoc which is #error This file was generated by an older version of protoc which is ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please #error incompatible with your Protocol Buffer headers. Please ^ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Reads.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. #error regenerate this file with a newer version of protoc. ^ Makefile:684: recipe for target 'Alignments.lo' failed make[3]: *** [Alignments.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... Makefile:691: recipe for target 'Alignments.pb.lo' failed make[3]: *** [Alignments.pb.lo] Error 1 Makefile:705: recipe for target 'Reads.lo' failed make[3]: *** [Reads.lo] Error 1 make[3]: Leaving directory '/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build/src' Makefile:461: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build/src' Makefile:483: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build' Makefile:391: recipe for target 'all' failed make: *** [all] Error 2 * ERROR: sci-biology/goby-cpp-2.0.1::gentoo failed (compile phase): * emake failed Portage 2.2.10 (default/linux/amd64/13.0, gcc-4.9.0, glibc-2.19-r1, 3.7.10-gentoo x86_64) ================================================================= System uname: Linux-3.7.10-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E31275_@_3.40GHz-with-gentoo-2.2 KiB Mem: 32800928 total, 1340764 free KiB Swap: 0 total, 0 free Timestamp of tree: Mon, 23 Jun 2014 00:00:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p47 dev-lang/python: 2.7.6-r1, 3.2.5-r4, 3.3.5, 3.4.0 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.14.1 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.9.0 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.15 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--jobs 4" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync parallel-fetch preserve-libs protect-owned sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" USE="acl amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx modules multilib ncurses nls nptl openmp pam pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 python3_3 python3_4" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
Similar case here: make[2]: Entering directory '/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build/src' echo '#define BUILD_TIMESTAMP "'`date "+%G%m%d%k%M%S" | sed 's/ //g'`'"' > /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/timestamp.h make all-am make[3]: Entering directory '/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build/src' /bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -c -o ICBFileInputStream.lo `test -f 'goby/ICBFileInputStream.cc' || echo '/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/'`goby/ICBFileInputStream.cc libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -c /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/ICBFileInputStream.cc -fPIC -DPIC -o .libs/ICBFileInputStream.o /bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -c -o Alignments.lo `test -f 'goby/Alignments.cc' || echo '/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/'`goby/Alignments.cc libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src -I.. -pthread -O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native -c /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.cc -fPIC -DPIC -o .libs/Alignments.o In file included from /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.h:31:0, from /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.cc:48: /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:17:2: error: #error This file was generated by an older version of protoc which is #error This file was generated by an older version of protoc which is ^ /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:18:2: error: #error incompatible with your Protocol Buffer headers. Please #error incompatible with your Protocol Buffer headers. Please ^ /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h:19:2: error: #error regenerate this file with a newer version of protoc. #error regenerate this file with a newer version of protoc. ^ Makefile:684: recipe for target 'Alignments.lo' failed make[3]: *** [Alignments.lo] Error 1 make[3]: Leaving directory '/mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/goby-cpp-2.0.1_build/src' Portage 2.2.7 (default/linux/amd64/13.0, gcc-4.8.3, glibc-2.17, 3.10.12-default-pciehp x86_64) ================================================================= System uname: Linux-3.10.12-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.2 KiB Mem: 16369080 total, 1758992 free KiB Swap: 4998972 total, 4837780 free Timestamp of tree: Tue, 30 Dec 2014 23:30:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p47 dev-java/java-config: 2.2.0 dev-lang/perl: 5.16.3 dev-lang/python: 2.7.5-r4, 3.2.5-r3 dev-util/cmake: 2.8.12 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6, 1.12.6, 1.13.4, 1.14 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.3.6-r1, 4.4.7, 4.6.4, 4.7.3, 4.8.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.4 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.12 (virtual/os-headers) sys-libs/glibc: 2.17 Repositories: gentoo gentoo-haskell science x-portage layman ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/bind /var/lib/hsqldb /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native" DISTDIR="/mnt/1TB/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="rsync://ftp.fi.muni.cz/pub/linux/gentoo/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/mnt/1TB/var/tmp" PORTDIR="/mnt/1TB/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/haskell /home/mmokrejs/proj/sci /usr/local/portage /var/lib/layman" USE="X acpi alsa amd64 amr apache apache2 avx berkdb bindist bluetooth boost bzip2 cairo cgi cli cracklib crypt cryptlib cups cxx dbus device-mapper dhcp directfb dri emboss encode fax fbcon ffmpeg flac fontconfig fortran gbm gd gdbm geoip gimp gnutls gpm gtk gudev hal hpijs hwdb iconv id3tag imaging innodb java jce jpeg jpg keymap ladspa lapack laptop lcms libnotify lm_sensors mad mmx modules mpi mpich2 multilib mysql ncurses nfs nls nptl nptlonly nsplugin ntfsprogs ocr ogg opengl openmp pam parport pcre pdf perl php png ppds pppd python readline rendering resolvconf scanner server session slideshow sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype udev unicode usb vim-syntax wavpack wifi x11 xml xorg zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_US en_GB cs cz" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4 php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC
I hit the same erro now as well, no idea what requirement is not here. Just guessing this is something about one of tehse packages? I don't have them installed at all. * dev-haskell/hprotoc Latest version available: 2.0.17 Latest version installed: [ Not Installed ] Size of files: 72 KiB Homepage: http://code.haskell.org/protocol-buffers/ Description: Parse Google Protocol Buffer specifications License: BSD * dev-haskell/network-protocol-xmpp Latest version available: 0.4.6 Latest version installed: [ Not Installed ] Size of files: 24 KiB Homepage: https://john-millikin.com/software/haskell-xmpp/ Description: Client library for the XMPP protocol License: GPL-3 * dev-haskell/protocol-buffers Latest version available: 2.0.17 Latest version installed: [ Not Installed ] Size of files: 54 KiB Homepage: http://code.haskell.org/protocol-buffers/ Description: Parse Google Protocol Buffer specifications License: BSD * dev-haskell/protocol-buffers-descriptor Latest version available: 2.0.17 Latest version installed: [ Not Installed ] Size of files: 32 KiB Homepage: http://code.haskell.org/protocol-buffers/ Description: Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification License: BSD head -n 30 /mnt/1TB/var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/src/goby/Alignments.pb.h // Generated by the protocol buffer compiler. DO NOT EDIT! // source: Alignments.proto #ifndef PROTOBUF_Alignments_2eproto__INCLUDED #define PROTOBUF_Alignments_2eproto__INCLUDED #include <string> #include <google/protobuf/stubs/common.h> #if GOOGLE_PROTOBUF_VERSION < 2004000 #error This file was generated by a newer version of protoc which is #error incompatible with your Protocol Buffer headers. Please update #error your headers. #endif #if 2004001 < GOOGLE_PROTOBUF_MIN_PROTOC_VERSION #error This file was generated by an older version of protoc which is #error incompatible with your Protocol Buffer headers. Please #error regenerate this file with a newer version of protoc. #endif #include <google/protobuf/generated_message_util.h> #include <google/protobuf/repeated_field.h> #include <google/protobuf/extension_set.h> #include <google/protobuf/generated_message_reflection.h> // @@protoc_insertion_point(includes) namespace goby { // Internal implementation detail -- do not call these.
Created attachment 400964 [details] build.log # emerge --info Portage 2.2.18 (python 2.7.5-final-0, default/linux/amd64/13.0, gcc-4.9.2, glibc-2.20-r2, 3.10.72-default-pciehp x86_64) ================================================================= System uname: Linux-3.10.72-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.2 KiB Mem: 16368868 total, 1272108 free KiB Swap: 4998972 total, 4965420 free Timestamp of repository gentoo: Fri, 10 Apr 2015 10:30:01 +0000 sh bash 4.3_p33-r2 ld GNU ld (Gentoo 2.25 p1.0) 2.25 app-shells/bash: 4.3_p33-r2::gentoo dev-java/java-config: 2.2.0::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.5-r4::gentoo, 3.2.5-r3::gentoo dev-util/cmake: 3.1.0::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.13.11::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.11.6::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14::gentoo, 1.15::gentoo sys-devel/binutils: 2.25::gentoo sys-devel/gcc: 4.3.6-r1::gentoo, 4.4.7::gentoo, 4.6.4::gentoo, 4.7.4::gentoo, 4.8.4::gentoo, 4.9.2::gentoo sys-devel/gcc-config: 1.8::gentoo sys-devel/libtool: 2.4.4::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.19::gentoo (virtual/os-headers) sys-libs/glibc: 2.20-r2::gentoo Repositories: gentoo location: /mnt/1TB/usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 haskell location: /var/lib/layman/haskell masters: gentoo priority: 0 science location: /home/mmokrejs/proj/sci masters: gentoo priority: 1 x-portage location: /usr/local/portage masters: gentoo priority: 2 layman location: /var/lib/layman masters: gentoo priority: 3 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.2/conf /var/bind /var/lib/hsqldb /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native" DISTDIR="/mnt/1TB/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="rsync://ftp.fi.muni.cz/pub/linux/gentoo/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/mnt/1TB/var/tmp" USE="X acpi alsa amd64 amr apache apache2 apulse avx berkdb bindist bluetooth boost bzip2 cairo cgi cli cracklib crypt cryptlib cups cxx dbus device-mapper dhcp directfb dri emboss encode fax fbcon ffmpeg flac fontconfig fortran gbm gd gdbm geoip gimp gnutls gpm gtk gudev hal hpijs hwdb iconv id3tag imaging innodb java jce jpeg jpg keymap ladspa lapack laptop lcms libnotify lm_sensors mad mmx mmxext modules mpi mpich2 multilib mysql ncurses nfs nls nptl nptlonly nsplugin ntfsprogs ocr ogg opengl openmp pam parport pcre pdf perl php png ppds pppd python readline rendering resolvconf scanner server session slideshow sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype udev unicode usb vim-syntax wavpack wifi x11 xml xorg zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_US en_GB cs cz" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-4 php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
# emerge -s protobuf [ Results for search key : protobuf ] Searching... * dev-libs/protobuf Latest version available: 2.6.1-r3 Latest version installed: 2.5.0 Size of files: 1975 KiB Homepage: http://code.google.com/p/protobuf/ https://github.com/google/protobuf/ Description: Google's Protocol Buffers -- an efficient method of encoding structured data License: Apache-2.0 * dev-libs/protobuf-c Latest version available: 1.1.1 Latest version installed: [ Not Installed ] Size of files: 445 KiB Homepage: https://github.com/protobuf-c/protobuf-c/ Description: code generator and runtime libraries to use Protocol Buffers (protobuf) from pure C License: BSD-2 # The page http://campagnelab.org/software/goby/tutorials/developing-with-goby/goby-c-api/ mentions http://protobuf.googlecode.com/files/protobuf-2.4.1.tar.gz but even upgrading to =dev-libs/protobuf-2.6.1-r3 does not help.
+ 13 Apr 2015; Justin Lecher <jlec@gentoo.org> +files/Alignments.proto, + +files/Reads.proto, +files/goby-cpp-2.0.1-underlinking.patch, + goby-cpp-2.0.1.ebuild: + Regenerate protocols, bug #514556 +
