493350 – Multiple different emerges including emerge portage forces update of dev-python/numpy to 1.7.1 and several rebuilds

Bug 493350 - Multiple different emerges including emerge portage forces update of dev-python/numpy to 1.7.1 and several rebuilds

Summary: Multiple different emerges including emerge portage forces update of dev-pyth...

Status:	RESOLVED DUPLICATE of bug 486580

Alias:	None

Product:	Portage Development
Classification:	Unclassified
Component:	Core - Interface (emerge) (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Portage team

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2013-12-04 23:35 UTC by Honza
Modified:	2013-12-05 15:02 UTC (History)
CC List:	0 users

See Also:
Package list:
Runtime testing required:	---

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Description Honza 2013-12-04 23:35:08 UTC

Multiple different emerges (not exactly everything, but almost) now (after #487870 ) forces update of dev-python/numpy to 1.7.1 despite not having obvious dependency on it.

Also, libxml2 is reinstalled first, which makes absolutely no sense.


Reproducible: Always

Steps to Reproduce:
1. emerge -v --ask portage

Actual Results:  
[ebuild  rR    ] dev-libs/libxml2-2.9.1-r1:2  USE="icu ipv6 lzma python readline -debug -examples -static-libs {-test}" PYTHON_TARGETS="python2_6 python2_7 -python3_2 (-python3_3)" 0 kB
[ebuild  rR    ] x11-proto/xcb-proto-1.8-r3  PYTHON_TARGETS="python2_6 python2_7 -python3_2 (-python3_3)" 0 kB   
[ebuild  r  U  ] dev-python/numpy-1.7.1 [1.6.2-r2] USE="doc -lapack {-test}" PYTHON_TARGETS="python2_6 python2_7 -python3_2 (-python3_3)" 18,785 kB
[ebuild     U  ] sys-apps/portage-2.2.7 [2.2.1] USE="doc (ipc) xattr -build -epydoc (-pypy2_0) -python2 -python3 (-selinux)" LINGUAS="-ru" PYTHON_TARGETS="python2_6 python2_7 (-pypy2_0) -python3_2 (-python3_3) (-python3_4)" 886 kB
[ebuild  rR    ] media-libs/alsa-lib-1.0.27.1  USE="doc python -alisp -debug" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7" 0 kB
[ebuild  rR    ] app-emulation/libvirt-1.1.3-r1  USE="caps fuse libvirtd lvm macvtap nls parted python qemu udev uml vepa -audit -avahi -firewalld -iscsi -lxc -nfs -numa -openvz -pcap -phyp -policykit -rbd -sasl (-selinux) -systemd -virt-network -virtualbox -xen" PYTHON_SINGLE_TARGET="python2_7 -python2_6" PYTHON_TARGETS="python2_6 python2_7" 0 kB
[ebuild  rR    ] dev-python/pygame-1.9.2_pre20120101-r2  USE="X doc -examples {-test}" PYTHON_TARGETS="python2_6 python2_7 -python3_2 (-python3_3)" 0 kB

Expected Results:  
[ebuild     U  ] sys-apps/portage-2.2.7 [2.2.1] USE="doc (ipc) xattr -build -epydoc (-pypy2_0) -python2 -python3 (-selinux)" LINGUAS="-ru" PYTHON_TARGETS="python2_6 python2_7 (-pypy2_0) -python3_2 (-python3_3) (-python3_4)" 886 kB

# emerge --info
Portage 2.2.1 (default/linux/x86/13.0, gcc-4.5.3-hardenednopie, glibc-2.11.2-r3, 3.2.0-37-generic-pae i686)
=================================================================
System uname: Linux-3.2.0-37-generic-pae-i686-AMD_Phenom-tm-_II_X3_720_Processor-with-gentoo-2.2
KiB Mem:    12412872 total,   9200124 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Wed, 04 Dec 2013 00:15:01 +0000
ld GNU ld (GNU Binutils) 2.20.1.20100303
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.6.8-r3, 2.7.5-r3
dev-util/cmake:           2.8.10.2-r2
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.4_p6-r1, 1.6.3-r1, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.6, 1.13.4
sys-devel/binutils:       2.18-r3, 2.20.1-r1
sys-devel/gcc:            2.95.3-r8::<unknown repository>, 3.4.6-r2, 4.3.4, 4.5.3-r2
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.2.10
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc:           2.11.2-r3
Repositories: gentoo sunrise dev-zero x-portage
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -mtune=k8 -march=k8 -fomit-frame-pointer -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/bind /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -mtune=k8 -march=k8 -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://ftp.sh.cvut.cz/MIRRORS/gentoo/gentoo/ http://gentoo.oregonstate.edu http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/sunrise /usr/local/portage/layman/dev-zero /usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow 3dnowex 3dnowext X Xaw3d aalib acl alsa apache2 apm avi bash-completion berkdb browserplugin bzip2 caps cdr cli cracklib crypt css curl cxx dbus dga directfb doc dri dts dvd encode erandom esd fbcon ffmpeg flac fltk force-cgi-redirect fortran gd gdbm ggi gif gpm gtk iconv imagemagick imlib innodb ipv6 jadetex java jpeg jpeg2k lcms lesstif libcaca libwww lirc lua mad mailwrapper matroska mbox mcal memlimit mikmod mmx mmx2 mmxext mng modules motif mozilla mpeg mudflap multislot mysql ncurses nls nptl ogg oggvorbis old-linux opengl openmp oss pam pcre pdflib perl png postscript python qt qt3support quicktime readline real samba sdl session slang snmp spell sqlite sse sse2 ssl svga tcpd tetex theora tiff truetype unicode usb userlocales v4l v4l2 vhosts videos vorbis wmf x264 x86 xattr xgetdefault xml xorg xosd xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="access auth auth_dbm auth_anon auth_basic auth_digest authz_host authz_default authz_user alias file-cache echo charset-lite cache disk-cache mem-cache ext-filter case_filter case-filter-in deflate mime-magic cern-meta expires headers usertrack unique-id proxy proxy-connect proxy-ftp proxy-http info include cgi cgid dav dav-fs vhost-alias speling rewrite log_config logio env setenvif mime status autoindex asis negotiation dir imap actions userdir so mem_cache mime_magic vhost_alias filter authn_file" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_6 python2_7" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="alpha arm i386 x86_64" RUBY_TARGETS="ruby19 ruby18" USERLAND="GNU" VIDEO_CARDS="r128 radeon radeonhd vesa r300 r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.6 2.7"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Comment 1 Honza 2013-12-04 23:40:48 UTC

Uh ... upgrading to dev-python/numpy-1.7.1 doesn't really help, then emerge wants to reinstall numpy (and those other packages) again.

Examples of other stuff which bring numpy in:

emerge --ask -1 -v glibc
emerge --ask -1 -v openssl openssh neon busybox

Comment 2 Honza 2013-12-05 00:23:18 UTC

Hmmm ... considering that the list of applications to rebuild started to shorten when I emerged dev-lang/python-exec, it may be related to #486580 or #489440 ...

Comment 3 Jeroen Roovers (RETIRED) gentoo-dev

2013-12-05 14:31:10 UTC

Try emerge --tree to see what might be pulling in numpy. Other than that, I see no bug here, except as a duplicate of bug #489922 or bug #489418.

Comment 4 Sebastian Luther (few) 2013-12-05 15:02:01 UTC


*** This bug has been marked as a duplicate of bug 486580 ***