Bug 488550 – sci-biology/vaal-45166 fails to build

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Myckel Habets 2013-10-19 07:45:37 UTC]

Doing bug 472088 I found that sci-biology/vaal-45166 fails to build on x86.

Reproducible: Always

Steps to Reproduce:
1. emerge =sci-biology/vaal-45166
Actual Results:  
build fails, see build.log

Expected Results:  
Software build properly.

emerge --info
Portage 2.2.1 (default/linux/x86/13.0, gcc-4.7.3, glibc-2.15-r3, 3.10.7-gentoo-r1 i686)
=================================================================
System uname: Linux-3.10.7-gentoo-r1-i686-Intel-R-_Celeron-R-_CPU_2.40GHz-with-gentoo-2.2
KiB Mem:      505072 total,    220744 free
KiB Swap:     506040 total,    506040 free
Timestamp of tree: Thu, 17 Oct 2013 17:00:01 +0000
ld GNU ld (GNU Binutils) 2.23.1
distcc 3.1 i686-pc-linux-gnu [enabled]
app-shells/bash:          4.2_p45
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.5-r3, 3.2.5-r3
dev-util/cmake:           2.8.10.2-r2
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.10.3, 1.11.6, 1.13.4
sys-devel/binutils:       2.23.1
sys-devel/gcc:            4.7.3-r1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo x-portage
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA -dlj-1.1 Oracle-BCLA-JavaSE IBM-J1.6"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-march=pentium4 -pipe -ggdb -O2"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=pentium4 -pipe -ggdb -O2"
DISTDIR="/home/distfiles"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distcc distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/home/portage"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
USE="X accessibility acl alsa apng assistant avahi bash-completion berkdb bluetooth bzip2 cairo cli compat corefonts cracklib crypt cups curl cxx dbus deprecated devil dri examples expat extensions extras fam fbcon fontconfig fortran fts3 gdbm gdu gif glib gmp gnutls gpm gtk gtk3 gudev hwdb iconv ipv6 java jpeg keymap lapack latex libnotify libssh2 md5sum midi mikmod minizip mmx mod modules mp3 mudflap ncurses nls nptl nsplugin objc ogg opengl openmp pam pcre php pic png postscript python qt3support readline ruby sdl session smpeg sockets sqlite sse sse2 ssl startup-notification svg tcpd threads thunar tiff timidity tk tordns truetype udev unicode v4l2 vorbis webdav x86 xcb xml xvfb zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="nl" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2 jython2_5" RUBY_TARGETS="ruby18 ruby19 jruby ruby20" USERLAND="GNU" VIDEO_CARDS="vesa intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

[Comment 1 Myckel Habets 2013-10-19 07:45:53 UTC]

Created attachment 361286 [details]
Build log

[Comment 2 Justin Lecher (RETIRED) 2013-11-12 17:45:56 UTC]

+  12 Nov 2013; Justin Lecher <[e-mail]> vaal-1.6.ebuild,
+  vaal-42179.ebuild, vaal-45166.ebuild, vaal-46233.ebuild:
+  Drop x86 as upstream gives no support and types are not easily fixable,
+  #458488, #472088 & #488550
+