Cannot load the correct version of libR.dylib during compilation. Reproducible: Always Steps to Reproduce: 1.emerge '=dev-lang/R-3.0.0' Actual Results: It failed. Expected Results: It should build R-3.0.0 Portage 2.2.01.21890-prefix (prefix/darwin/macos/10.8/x64, gcc-4.2.1, unavailable, 12.3.0 x86_64) ================================================================= System Settings ================================================================= System uname: Darwin-12.3.0-x86_64-i386-64bit Timestamp of tree: Fri, 26 Apr 2013 13:43:50 +0000 app-shells/bash: 4.2_p39-r1 dev-lang/python: 2.7.3-r3, 3.3.0-r1 dev-util/cmake: 2.8.10.2-r2 dev-util/pkgconfig: 0.28 sys-devel/autoconf: 2.69 sys-devel/automake: 1.12.4 sys-devel/gcc-config: 1.8-r00.1 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 Repositories: gentoo_prefix ACCEPT_KEYWORDS="~x64-macos" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-apple-darwin12" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-apple-darwin12" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/Users/mys_721tx/gentoo/usr/portage/distfiles" FCFLAGS="" FEATURES="assume-digests binpkg-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/" LANG="en_US.UTF-8" LDFLAGS="-Wl,-dead_strip_dylibs" MAKEOPTS="-j2" PKGDIR="/Users/mys_721tx/gentoo/usr/portage/packages" PORTAGE_CONFIGROOT="/Users/mys_721tx/gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/Users/mys_721tx/gentoo/var/tmp" PORTDIR="/Users/mys_721tx/gentoo/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix" USE="aqua coreaudio cracklib cxx ipv6 mmx mmxext modules ncurses nls objc objc++ prefix readline sse sse2 ssl unicode x64-macos zlib" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="Darwin" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse" KERNEL="Darwin" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 346652 [details] build.log dyld: Library not loaded: /Users/mys_721tx/gentoo/usr/lib/R/lib/libR.dylib Referenced from: /Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.0/work/R-3.0.0/bin/exec/R Reason: Incompatible library version: R requires version 3.0.0 or later, but libR.dylib provides version 2.15.0 /Users/mys_721tx/gentoo/bin/bash: line 1: 99810 Done echo "tools:::.install_package_description('.', '"../../../library/tools"')" 99811 Trace/BPT trap: 5 | R_DEFAULT_PACKAGES=NULL ../../../bin/R --vanilla --slave > /dev/null make[3]: *** [all] Error 133 make[3]: Leaving directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.0/work/R-3.0.0/src/library/tools' make[2]: *** [R] Error 1 make[2]: Leaving directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.0/work/R-3.0.0/src/library' make[1]: *** [R] Error 1 make[1]: Leaving directory `/Users/mys_721tx/gentoo/var/tmp/portage/dev-lang/R-3.0.0/work/R-3.0.0/src' make: *** [R] Error 1
I find libR.dylib under ${EPREFIX}/var/tmp/portage/dev-lang/R-3.0.0/work/R-3.0.0/lib/ . Furthermore, I am able to compile and install dev-lang/R-3.0.0 after unmerging dev-lang/R-2.15.0 . It appears to be an environmental variable issue since the newly built R is searching under ${EPREFIX}/usr/lib/R/lib/ for the library.
fortran support is difficult now we're using Clang, I'm deferring this.
