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Bug 459720 - sci-biology/ncbi-tools does not respect AR/RANLIB
Summary: sci-biology/ncbi-tools does not respect AR/RANLIB
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Andrey Kislyuk (RETIRED)
Depends on:
Blocks: tc-directly
  Show dependency tree
Reported: 2013-02-28 15:10 UTC by Agostino Sarubbo
Modified: 2013-03-01 14:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Agostino Sarubbo gentoo-dev 2013-02-28 15:10:39 UTC
You receive this bug because this package does not respect my system's AR/RANLIB ( x86_64-pc-linux-gnu-ar - /usr/bin/x86_64-pc-linux-gnu-ar | x86_64-pc-linux-gnu-ranlib - /usr/bin/x86_64-pc-linux-gnu-ranlib ) and calls directly ar - /usr/bin/ar | ranlib - /usr/bin/ranlib
The possible solutions to fix this issue are:
1)Fix the buildsystem, if you can
2)inherit toolchain-funcs and use tc-export AR RANLIB
3)inherit toolchain-funcs and use emake AR="$(tc-getAR)" RANLIB="$(tc-getRANLIB)"

ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o 
objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o 
tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o 
tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o 
asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o 
wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o 
salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o 
alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2013-03-01 09:15:33 UTC
+*ncbi-tools-2.2.26-r1 (01 Mar 2013)
+  01 Mar 2013; Justin Lecher <> +ncbi-tools-2.2.26-r1.ebuild:
+  Clean heuristic to fix build env, #459720 and #459726

Please retry with revision 1 and reopen if still exists.
Comment 2 Agostino Sarubbo gentoo-dev 2013-03-01 14:29:54 UTC
it still happens at least on ppc64
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2013-03-01 14:53:22 UTC
+*ncbi-tools-2.2.26-r2 (01 Mar 2013)
+  01 Mar 2013; Justin Lecher <> -ncbi-tools-2.2.26-r1.ebuild,
+  +ncbi-tools-2.2.26-r2.ebuild:
+  Fix all config files, #459720, #459726, #459878

Please test and reopen if needed