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Bug 45177 - mysql-4.0.18 fails to emerge (compiles successfully, but install fails)
Summary: mysql-4.0.18 fails to emerge (compiles successfully, but install fails)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Linux MySQL bugs team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2004-03-19 16:11 UTC by Maurice van der Pot (RETIRED)
Modified: 2004-05-11 10:30 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Ebuild supporting a "clientonly" flag. (mysql-4.0.18-r1.ebuild,8.40 KB, text/plain)
2004-03-22 20:48 UTC, Joe Khoobyar
Details
Patch to fix configure bug with --without-server and --enable-thread-safe-client (mysql-4.0.18-threadsafe-withoutserver.patch,756 bytes, patch)
2004-03-22 20:49 UTC, Joe Khoobyar
Details | Diff

Note You need to log in before you can comment on or make changes to this bug.
Description Maurice van der Pot (RETIRED) gentoo-dev 2004-03-19 16:11:05 UTC
This is what happens when updating to mysql-4.0.18:

>>> Install mysql-4.0.18 into /var/tmp/portage/mysql-4.0.18/image/ category dev-db
Making install in .
make[1]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18'
make[2]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18'
make[1]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18'
Making install in include
make[1]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make  install-am
make[2]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make[3]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make[3]: Nothing to be done for `install-exec-am'.
/var/tmp/portage/mysql-4.0.18/image//usr/include/mysql
make[3]: /var/tmp/portage/mysql-4.0.18/image//usr/include/mysql: Command not found
make[3]: *** [install-pkgincludeHEADERS] Error 127
make[3]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make[2]: *** [install-am] Error 2
make[2]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make[1]: *** [install] Error 2
make[1]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/include'
make: *** [install-recursive] Error 1

!!! ERROR: dev-db/mysql-4.0.18 failed.
!!! Function src_install, Line 164, Exitcode 2
!!! (no error message)


Reproducible: Always
Steps to Reproduce:
1. emerge mysql-4.0.18

Actual Results:  
install part of emerge failed

Expected Results:  
installed successfully

Portage 2.0.50-r1 (default-x86-1.4, gcc-3.3.3, glibc-2.3.3_pre20040207-r0,
2.6.3-gentoo-r1)
=================================================================
System uname: 2.6.3-gentoo-r1 i686 Intel(R) Pentium(R) 4 CPU 3.00GHz
Gentoo Base System version 1.4.3.13p1
distcc 2.13 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
ccache version 2.3 [enabled]
Autoconf: sys-devel/autoconf-2.59-r3
Automake: sys-devel/automake-1.8.2
ACCEPT_KEYWORDS="x86 ~x86"
AUTOCLEAN="yes"
CFLAGS="-march=pentium4 -O2 -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
COMPILER="gcc3"
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config
 /usr/kde/3.1/share/config /usr/kde/3.2/share/config /usr/kde/3/share/config
 /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/env.d"
CXXFLAGS="-march=pentium4 -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs ccache fixpackages sandbox userpriv usersandbox"
GENTOO_MIRRORS="http://ftp.snt.utwente.nl/pub/os/linux/gentoo
http://ftp.gentoo.skynet.be/pub/gentoo/
http://mirrors.sec.informatik.tu-darmstadt.de/gentoo
http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp.easynet.nl/mirror/gentoo/"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage_overlay"
SYNC="rsync://griffon26.kfk4ever.com/gentoo-portage"
USE="X Xaw3d alsa apache2 avi bonobo cdr crypt cscope dedicated dga dvd encode
 ethereal fastcgi fbcon freetds gd gdbm ggi gif gpm gstreamer gtk gtk2 imlib
 ipv6 jikes joystick jpeg libwww lirc mad mcal memlimit mikmod mmx motif
 mozilla mpeg mpi mysql ncurses nls nocd oggvorbis opengl pam pdflib perl
 plotutils png pnp python qt quicktime readline samba sdl slang snmp spell
 sse ssl svga tcltk tcpd tiff truetype trusted usb wmf wxwindows x86 xml xml2
 xmms xosd xv zlib"
Comment 1 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-03-20 13:26:55 UTC
could you clone the Makefiles out of your MySQL tree into a new subdirectory set (so there would be a directory tree with only Makefiles), and include config.log and config.status, tar it up and attach it here ?
Comment 2 Maurice van der Pot (RETIRED) gentoo-dev 2004-03-22 16:18:09 UTC
When I emerged again, I noticed this:

configure.in:7: version mismatch.  This is Automake 1.8.2,
configure.in:7: but the definition used by this AM_INIT_AUTOMAKE
configure.in:7: comes from Automake 1.7.6.  You should recreate
configure.in:7: aclocal.m4 with aclocal and run automake again.

Turns out the user I was su-ing from had WANT_AUTOMAKE in the environment and I hadn't used su -. After su-ing correctly, I still got this message:

configure.in:7: version mismatch.  This is Automake 1.7.9,
configure.in:7: but the definition used by this AM_INIT_AUTOMAKE
configure.in:7: comes from Automake 1.7.6.  You should recreate
configure.in:7: aclocal.m4 with aclocal and run automake again.

But apparently that wasn't a real problem, because the build went through as well as the install.

I'm not entirely sure why automake is in the picture at all. Isn't that normally run before distribution of the source?

In any case, I'm sorry to have bothered you. Thanks for your help.
Comment 3 Joe Khoobyar 2004-03-22 20:48:55 UTC
Created attachment 27827 [details]
Ebuild supporting a "clientonly" flag.

Proposed ebuild, referencing my previous comment.
Comment 4 Joe Khoobyar 2004-03-22 20:49:57 UTC
Created attachment 27828 [details, diff]
Patch to fix configure bug with --without-server and --enable-thread-safe-client

Patch, as referenced in my above comment.
Comment 5 Joe Khoobyar 2004-03-22 20:51:52 UTC
Sorry, wrong bug in the list. ;)
Comment 6 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-03-22 20:54:51 UTC
Joe: WTF are you talking about?

Maurice: please include the output of 'etcat -v automake' and 'etcat -v autoconf'.
Comment 7 Maurice van der Pot (RETIRED) gentoo-dev 2004-03-23 09:38:18 UTC
Only printing found installed programs.

*  sys-devel/automake :
        [   ] 1.6.1-r6 (1.5)
        [   ] 1.6.3 (1.5)
        [   ] 1.7.2 (1.5)
        [   ] 1.7.5-r2 (1.5)
        [   ] 1.7.7 (1.5)
        [ ~ ] 1.7.8 (1.5)
        [ ~I] 1.8.2 (1.5)

*  sys-devel/autoconf :
        [   ] 2.57-r1 (2.5)
        [ ~ ] 2.57a-r1 (2.5)
        [   ] 2.58 (2.5)
        [   ] 2.58-r1 (2.5)
        [ ~I] 2.59-r3 (2.5)
Comment 8 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-03-23 09:54:41 UTC
could you open up the ebuild, and around line 96 (right before automake, after autoconf).
then try to emerge it again, and see if things work.

we use autoconf/automake as we make modifications to the configure file.
you might also try leave the automake OUT of th ebuild (just leave the autoconf there).
Comment 9 Maurice van der Pot (RETIRED) gentoo-dev 2004-03-23 10:21:18 UTC
Don't know what you wanted me to insert "right before automake, after autoconf", but after removing automake, the warning also isn't given anymore.
Comment 10 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-03-23 10:32:53 UTC
sorry, that's what i get for answering bugs before my morning coffee has kicked in.

i meant to say after automake, before autoconf.

with automake removed, does it build and run for you?
Comment 11 Maurice van der Pot (RETIRED) gentoo-dev 2004-03-23 11:11:57 UTC
I'm still not sure what you mean.

"could you open up the ebuild, and around line 96 (right before automake, after autoconf).
then try to emerge it again, and see if things work."

What kind of change to the ebuild did you want to describe here?
Comment 12 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-03-23 11:14:27 UTC
add an 'aclocal' invocation at that point.
does just removing automake fix it as well for you?
Comment 13 Maurice van der Pot (RETIRED) gentoo-dev 2004-03-23 12:01:14 UTC
Adding aclocal in between causes a lot of "underquoted definition" warnings because of the stricter aclocal 1.8, but the original warning about an automake version mismatch is no longer generated.

Removing automake fixed the original warning and naturally didn't introduce the others, so I suppose this would be the solution of choice.
Comment 14 Joe Khoobyar 2004-03-23 12:57:22 UTC
> Joe:  WTF are you talking about?

robbat2:  LOL.  Sorry.  I posted to the wrong bug. :-0  Check out bug #45154.  That's what I was talking about. ;-)
Comment 15 Andre Kuehne 2004-04-13 08:09:02 UTC
i am not sure if it compiles at all. i emerged:

[ebuild  N    ] dev-db/mysql-4.0.18  +berkdb -debug -innodb +perl +readline +ssl -static +tcpd  0 kB

and this is the last bit of output:

+ rm -f ./viosocket.c
+ /bin/ln -s ../libmysql/viosocket.c ./viosocket.c
+ rm -f ./viossl.c
+ /bin/ln -s ../libmysql/viossl.c ./viossl.c
+ rm -f ./viosslfactories.c
+ /bin/ln -s ../libmysql/viosslfactories.c ./viosslfactories.c
make[1]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/libmysql_r'
echo timestamp > linked_libmysql_r_sources
cd client; make link_sources
make[1]: Entering directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/client'
for f in log_event.h log_event.cc ; do \
  rm -f ./$f; \
  /bin/ln -s ../sql/$f ./$f; \
        done;
make[1]: Leaving directory `/var/tmp/portage/mysql-4.0.18/work/mysql-4.0.18/client'
echo timestamp > linked_client_sources
WARNING: Using auxiliary files such as `acconfig.h', `config.h.bot'
WARNING: and `config.h.top', to define templates for `config.h.in'
WARNING: is deprecated and discouraged.

WARNING: Using the third argument of `AC_DEFINE' and
WARNING: `AC_DEFINE_UNQUOTED' allows to define a template without
WARNING: `acconfig.h':

WARNING:   AC_DEFINE([NEED_MAIN], 1,
WARNING:             [Define if a function `main' is needed.])

WARNING: More sophisticated templates can also be produced, see the
WARNING: documentation.
autoheader-2.54: `config.h.in' is unchanged
touch ./)].in)].in
/bin/sh: -c: line 1: syntax error near unexpected token `)'
/bin/sh: -c: line 1: `touch ./)].in)].in'
make: *** [)].in] Error 2

!!! ERROR: dev-db/mysql-4.0.18 failed.
!!! Function src_compile, Line 160, Exitcode 2
!!! compile problem
Comment 16 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-04-13 18:41:32 UTC
please try 4.0.18-r1 it should work fine out of the box.
Comment 17 Kevin 2004-05-11 07:12:29 UTC
I just tried r1 and it failed with the following messages:

creating insert_test
creating select_test
gcc -O3 -DDBUG_OFF -mcpu=athlon-xp -O3 -pipe -DHAVE_ERRNO_AS_DEFINE=1 -DUSE_OLD_FUNCTIONS -rdynamic -o .libs/thread_test thread_test.o  /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.2/libstdc++.so -L/usr/i686-pc-linux-gnu/bin -L/usr/i686-pc-linux-gnu/lib -L/usr/lib/gcc-lib/../../i686-pc-linux-gnu/lib -lgcc_s -lc ../libmysql/.libs/libmysqlclient.so -L/usr/lib -lz -lcrypt -lnsl -lm -lssl -lcrypto -Wl,--rpath -Wl,/usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.2 -Wl,--rpath -Wl,/usr/lib/mysql
collect2: ld terminated with signal 11 [Segmentation fault]
distcc[5887] ERROR: compile on localhost failed
make[2]: *** [thread_test] Error 1
make[2]: *** Waiting for unfinished jobs....
g++ -O3 -DDBUG_OFF -mcpu=athlon-xp -O3 -pipe -felide-constructors -fno-exceptions -fno-rtti -fno-implicit-templates -fno-exceptions -fno-rtti -rdynamic -o .libs/mysql mysql.o readline.o sql_string.o completion_hash.o  -lreadline -lncurses /usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.2/libstdc++.so -L/usr/i686-pc-linux-gnu/bin -L/usr/i686-pc-linux-gnu/lib -L/usr/lib/gcc-lib/../../i686-pc-linux-gnu/lib -lgcc_s -lc ../libmysql/.libs/libmysqlclient.so -L/usr/lib -lz -lcrypt -lnsl -lm -lssl -lcrypto -Wl,--rpath -Wl,/usr/lib/gcc-lib/i686-pc-linux-gnu/3.3.2 -Wl,--rpath -Wl,/usr/lib/mysql
creating mysql
make[2]: Leaving directory `/var/tmp/portage/mysql-4.0.18-r1/work/mysql-4.0.18/client'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/mysql-4.0.18-r1/work/mysql-4.0.18'
make: *** [all] Error 2

!!! ERROR: dev-db/mysql-4.0.18-r1 failed.
!!! Function src_compile, Line 164, Exitcode 2
!!! compile problem

bash-2.05b#

bash-2.05b# emerge info
Portage 2.0.50-r6 (default-x86-1.4, gcc-3.3.2, glibc-2.3.2-r9, 2.4.22-gentoo-r7)
=================================================================
System uname: 2.4.22-gentoo-r7 i686 AMD Athlon(tm) XP
Gentoo Base System version 1.4.3.13
distcc 2.13 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [enabled]
ccache version 2.3 [enabled]
Autoconf: sys-devel/autoconf-2.58
Automake: sys-devel/automake-1.7.7
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CFLAGS="-mcpu=athlon-xp -O3 -pipe"
CHOST="i686-pc-linux-gnu"
COMPILER="gcc3"
CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config /usr/kde/3.2/share/config /usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/config /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/afs/C /etc/afs/afsws /etc/gconf /etc/env.d"
CXXFLAGS="-mcpu=athlon-xp -O3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs ccache distcc sandbox"
GENTOO_MIRRORS="http://gentoo.oregonstate.edu http://distro.ibiblio.org/pub/Linux/distributions/gentoo"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="X Xaw3d acl acpi afs alsa apache2 apm arts avi berkdb bonobo caps cdr crypt cups doc emacs emacs-w3 encode esd ethereal evo firebird flac foomaticdb gdbm gif gnome gpm gstreamer gtk gtk2 gtkhtml guile hardened icq imagemagick imap imlib innodb ipv6 jabber jack java jikes jpeg kde kerberos krb4 ldap libg++ libwww mad mcal mikmod motif mozilla mpeg mysql ncurses nls odbc oggvorbis opengl oss pam pda pdflib perl plotutils png ppds prelude python qt quicktime readline ruby samba sasl sdl slang slp spell sse ssl svga tcltk tcpd tetex tiff truetype unicode usb vhosts x86 xinerama xml xml2 xmms xv zeo zlib"

bash-2.05b#

This was an attempted upgrade from 4.0.16.  I think I probably changed some parameters in my USE variable between 4.0.16 and now, so it may be something that I'm doing.

Let me know if you need any other info.
Comment 18 Maurice van der Pot (RETIRED) gentoo-dev 2004-05-11 07:47:06 UTC
> collect2: ld terminated with signal 11 [Segmentation fault]

I'm no gentoo developer, but maybe I can help a little.
The line above indicates it is a bug in ld, which is part of binutils.

What version of binutils do you have installed? 
Have you noticed the same problem with any other packages?
Comment 19 Kevin 2004-05-11 08:10:00 UTC
My version of binutils:
*  sys-devel/binutils
      Latest version available: 2.14.90.0.7-r4
      Latest version installed: 2.14.90.0.7-r4
      Size of downloaded files: 10,327 kB
      Homepage:    http://sources.redhat.com/binutils/
      Description: Tools necessary to build programs
      License:     GPL-2 | LGPL-2


No, I don't see this problem with other packages.

Thanks for your comment.  Maybe the latest version of binutils is buggy?
Comment 20 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-05-11 09:59:06 UTC
Maurice: did 4.0.18-r1 work for you?
Comment 21 Maurice van der Pot (RETIRED) gentoo-dev 2004-05-11 10:25:25 UTC
Yup, I currently have 4.0.18-r1 installed.
Comment 22 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-05-11 10:29:51 UTC
ok, i'm closing this bug then.

Kevin: try to reproduce your bug without distcc, and use O2 in cflags.
MySQL is one of the hardest packages to compile in terms of how much it actually uses RAM+CPU. You might need more RAM/Swap.
Comment 23 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2004-05-11 10:30:20 UTC
closing as reporter notes it works now.