'emerge numpy' fails with: ... >>> Downloading 'ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo/distfiles/numpy-1.6.0-user.pdf' --2012-12-05 10:03:59-- ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo/distfiles/numpy-1.6.0-user.pdf Connecting to 10.101.10.254:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 474664 (464K) [application/pdf] Saving to: ‘/usr/local/portage/distfiles_leopard/numpy-1.6.0-user.pdf’ 100%[======================================>] 474,664 --.-K/s in 0.006s 2012-12-05 10:03:59 (73.6 MB/s) - ‘/usr/local/portage/distfiles_leopard/numpy-1.6.0-user.pdf’ saved [474664/474664] !!! Fetched file: numpy-1.6.0-user.pdf VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 474664 !!! Expected: 20021 Refetching... File renamed to '/usr/local/portage/distfiles_leopard/numpy-1.6.0-user.pdf._checksum_failure_.3y4lK3' !!! Couldn't download 'numpy-1.6.0-user.pdf'. Aborting. * Fetch failed for 'dev-python/numpy-1.7.0_beta2', Log file:
USE=-doc emerge -v1 numpy works.
Sorry for keep you waiting. Does the problem still persist with the new ebuilds?
It still fails with the same error: ... >>> Downloading 'http://docs.scipy.org/doc/numpy-1.6.0/numpy-user.pdf' --2012-12-22 12:02:47-- http://docs.scipy.org/doc/numpy-1.6.0/numpy-user.pdf Resolving docs.scipy.org (docs.scipy.org)... 216.62.213.249 Connecting to docs.scipy.org (docs.scipy.org)|216.62.213.249|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 474664 (464K) [application/pdf] Saving to: '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' 100%[======================================>] 474,664 135KB/s in 3.4s 2012-12-22 12:02:53 (135 KB/s) - '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' saved [474664/474664] !!! Fetched file: numpy-1.6.0-user.pdf VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 474664 !!! Expected: 20021 Refetching... File renamed to '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf._checksum_failure_.YSHU05' !!! Couldn't download 'numpy-1.6.0-user.pdf'. Aborting.
It seems me, that I now have to mask numpy-1.7.0_beta2, because the failing of the numpy upgrade blocks the installation of other packages: root@impala:/root(70)# emerge -vuND world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] dev-python/numpy-1.7.0_pre20121217-r2::sage-on-gentoo [1.6.2::gentoo] USE="doc lapack {-test}" PYTHON_TARGETS="python2_7%* python3_2%* -python2_5% -python2_6% -python3_1%" 20 kB [ebuild U ] app-text/iso-codes-3.40 [3.37] 0 kB [ebuild Rf ] app-crypt/truecrypt-7.1a USE="X asm%*" 0 kB [ebuild R ] sys-apps/portage-2.1.11.38 USE="doc (ipc) xattr -build -epydoc (-pypy2_0) -python2 -python3 (-selinux) (-pypy1_9%)" LINGUAS="-pl" 0 kB Total: 4 packages (2 upgrades, 2 reinstalls), Size of downloads: 20 kB Fetch Restriction: 1 package WARNING: One or more updates have been skipped due to a dependency conflict: sci-libs/netcdf:0 (sci-libs/netcdf-4.2.1.1::gentoo, ebuild scheduled for merge) conflicts with ~sci-libs/netcdf-4.1.3[cxx,hdf5] required by (sci-visualization/paraview-3.14.1-r4::science, installed) !!! The following installed packages are masked: - dev-lisp/gentoo-init-1.0::lisp (masked by: package.mask) /usr/portage/profiles/package.mask: # Andrey Grozin <grozin@gentoo.org> (14 Dec 2012) # Stuff from the lisp overlay, with some version bumps # Masked for testing For more information, see the MASKED PACKAGES section in the emerge man page or refer to the Gentoo Handbook. >>> Verifying ebuild manifests >>> Starting parallel fetch >>> Emerging (1 of 4) dev-python/numpy-1.7.0_pre20121217-r2 from sage-on-gentoo * Fetching files in the background. To view fetch progress, run * `tail -f /var/log/emerge-fetch.log` in another terminal. * numpy-c4c169c7cb32075386bd03463a908035c655784b.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] * numpy-1.6.0-html.zip SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] * numpy-1.6.0-ref.pdf SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] >>> Downloading 'http://distfiles.gentoo.org/distfiles/numpy-1.6.0-user.pdf' --2012-12-22 12:15:11-- http://distfiles.gentoo.org/distfiles/numpy-1.6.0-user.pdf Resolving distfiles.gentoo.org (distfiles.gentoo.org)... 64.50.233.100, 156.56.247.195, 216.165.129.135, ... Connecting to distfiles.gentoo.org (distfiles.gentoo.org)|64.50.233.100|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 474664 (464K) [application/pdf] Saving to: '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' 100%[======================================>] 474,664 174KB/s in 2.7s 2012-12-22 12:15:14 (174 KB/s) - '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' saved [474664/474664] !!! Fetched file: numpy-1.6.0-user.pdf VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 474664 !!! Expected: 20021 Refetching... File renamed to '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf._checksum_failure_.YSHU05' >>> Downloading 'http://docs.scipy.org/doc/numpy-1.6.0/numpy-user.pdf' --2012-12-22 12:15:15-- http://docs.scipy.org/doc/numpy-1.6.0/numpy-user.pdf Resolving docs.scipy.org (docs.scipy.org)... 216.62.213.249 Connecting to docs.scipy.org (docs.scipy.org)|216.62.213.249|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 474664 (464K) [application/pdf] Saving to: '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' 100%[======================================>] 474,664 137KB/s in 3.4s 2012-12-22 12:15:19 (137 KB/s) - '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf' saved [474664/474664] !!! Fetched file: numpy-1.6.0-user.pdf VERIFY FAILED! !!! Reason: Filesize does not match recorded size !!! Got: 474664 !!! Expected: 20021 Refetching... File renamed to '/net/caiman/usr/local/portage/distfiles_caiman/numpy-1.6.0-user.pdf._checksum_failure_.YSHU05' !!! Couldn't download 'numpy-1.6.0-user.pdf'. Aborting. * Fetch failed for 'dev-python/numpy-1.7.0_pre20121217-r2', Log file: * '/var/tmp/portage/dev-python/numpy-1.7.0_pre20121217-r2/temp/build.log' >>> Failed to emerge dev-python/numpy-1.7.0_pre20121217-r2, Log file: >>> '/var/tmp/portage/dev-python/numpy-1.7.0_pre20121217-r2/temp/build.log' root@impala:/root(71)# emerge -uvDN --resume --skipfirst world These are the packages that would be merged, in order: Calculating dependencies... done! !!! One or more packages have been dropped due to !!! masking or unsatisfied dependencies: (app-crypt/truecrypt-7.1a::gentoo, ebuild scheduled for merge) (sys-apps/portage-2.1.11.38::gentoo, ebuild scheduled for merge) (app-text/iso-codes-3.40::gentoo, ebuild scheduled for merge) emerge: It seems we have nothing to resume... root@impala:/root(72)# emacs /etc/portage/package.mask root@impala:/root(73)# grep numpy /etc/portage/package.mask >=dev-python/numpy-1.7.0_beta2 root@impala:/root(74)# emerge -uvDN world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] app-text/iso-codes-3.40 [3.37] 0 kB [ebuild Rf ] app-crypt/truecrypt-7.1a USE="X asm%*" 0 kB [ebuild R ] sys-apps/portage-2.1.11.38 USE="doc (ipc) xattr -build -epydoc (-pypy2_0) -python2 -python3 (-selinux) (-pypy1_9%)" LINGUAS="-pl" 0 kB Total: 3 packages (1 upgrade, 2 reinstalls), Size of downloads: 0 kB Fetch Restriction: 1 package ... >>> Starting parallel fetch >>> Emerging (1 of 3) app-text/iso-codes-3.40 * iso-codes-3.40.tar.xz SHA256 SHA512 WHIRLPOOL size ;-) ... [ ok ] >>> Unpacking source... ...
I updated the Manifest file. Please sync your and try again.
See also https://github.com/cschwan/sage-on-gentoo/commit/c8efa8bb1b
Hi Juergen, very sorry that it took us so long to find about this bug. In the future could you use the github issue tracker: https://github.com/cschwan/sage-on-gentoo/issues that would mean less delay.
