Build fails Reproducible: Always Steps to Reproduce: 1. emerge -1 =sci-libs/hdf5-1.8.9 Actual Results: x86_64-pc-linux-gnu-gfortran -march=native -mtune=generic -O2 -pipe -I../../src -I../../fortran/src -march=native -mtune=generic -O2 -pipe -c -o H5fortran_detect.o H5fortran_detect.f90 H5fortran_detect.f90:175.16: REAL(KIND= 16) :: a 1 Error: Kind 16 not supported for type REAL at (1) H5fortran_detect.f90:178.21: a_size = SIZEOF(a) 1 Error: Symbol 'a' at (1) has no IMPLICIT type Portage 2.1.10.65 (default/linux/amd64/10.0/desktop/gnome, gcc-4.5.3, glibc-2.15-r2, 3.3.5-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.3.5-gentoo-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.1 Timestamp of tree: Wed, 06 Jun 2012 10:45:01 +0000 app-shells/bash: 4.2_p29 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.3-r2, 3.2.3-r1 dev-util/cmake: 2.8.8-r2 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.1-r1 sys-apps/openrc: 0.10.2 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.5, 1.12.1 sys-devel/binutils: 2.22-r1 sys-devel/gcc: 4.4.7, 4.5.3-r2, 4.6.3 sys-devel/gcc-config: 1.7.2 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r3 sys-kernel/linux-headers: 3.4 (virtual/os-headers) sys-libs/glibc: 2.15-r2 Repositories: gentoo science local ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -mtune=generic -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -mtune=generic -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="" FEATURES="assume-digests binpkg-logs compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles news parallel-fetch parallel-install parse-eapi-ebuild-head protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-march=native -mtune=generic -O2 -pipe" GENTOO_MIRRORS="http://trumpetti.atm.tut.fi/gentoo/ ftp://trumpetti.atm.tut.fi/gentoo/ http://mirror.mdfnet.se/gentoo" LANG="lv_LV.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en lv" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science /usr/local/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 avx bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli colord consolekit cracklib crypt cups cxx dbus dirac djvu dri dts dvd dvdr eds emboss encode evo exif fam ffmpeg fftw firefox flac fontconfig fortran gdbm gif gnome gnome-keyring gnome-online-accounts gpm graphviz gstreamer gtk iconv idn ipv6 jpeg latex lcms ldap libnotify mad matroska mmx mng modules mp3 mp4 mpeg mudflap multilib nautilus ncurses netcdf nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds pppd pulseaudio qt3support qt4 readline sdl session socialweb spell sse sse2 sse4_1 ssl ssse3 startup-notification svg tcpd theora tiff truetype udev udisks unicode upower usb vaapi vdpau vorbis vpx wmf wxwidgets x264 xcb xetex xinerama xml xmp xorg xpm xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en lv" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="fbdev nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON ================================================================= Package Settings ================================================================= sci-libs/hdf5-1.8.8-r1 was built with the following: USE="cxx fortran (multilib) zlib -debug -examples -fortran2003 -mpi -static-libs -szip -threads" CFLAGS="-march=native -mtune=generic -O3 -pipe" CXXFLAGS="-march=native -mtune=generic -O3 -pipe"
Created attachment 314405 [details] Compressed build log
+ 06 Jun 2012; Kacper Kowalik <xarthisius@gentoo.org> + +files/hdf5-1.8.9-static_libgfortran.patch, hdf5-1.8.9-r1.ebuild: + Link libgfortran statically to H5test_kind in order to circumvent kind + misdetection. Fixes #419895 by My Th <rei4dan@gmail.com> +
