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Bug 418413 - >=sci-chemistry/scala-3.3.18-r2 please stabilize
Summary: >=sci-chemistry/scala-3.3.18-r2 please stabilize
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Keywording and Stabilization (show other bugs)
Hardware: All Linux
: Normal enhancement (vote)
Assignee: Justin Lecher (RETIRED)
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on:
Blocks: gcc-4.6-stable
  Show dependency tree
 
Reported: 2012-05-31 17:01 UTC by Kacper Kowalik (Xarthisius) (RETIRED)
Modified: 2012-06-03 19:31 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

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Description Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2012-05-31 17:01:42 UTC 
Required for gcc-4.6 stabilization wrt bug 362843
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2012-05-31 17:11:05 UTC 
arches have fun, works and only contains the gcc4.6 patch
Comment 2 Elijah "Armageddon" El Lazkani (amd64 AT) 2012-06-01 06:20:56 UTC 
Could you please provide a way to test this applcation please ? I'm getting the following:

<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
<html> <!-- CCP4 HTML LOGFILE -->
<hr>
<!--SUMMARY_END--></FONT></B>
<pre>
Ignoring unrecognised switch "--help"
>>>>>> CCP4 library signal ccp4_general:Cannot open environ.def (Error)
	 raised in ccp4fyp <<<<<<
 scala:  Cannot open environ.def
 scala:  Cannot open environ.def
Times: User:       0.0s System:    0.0s Elapsed:     0:00  
</pre>
</html>
<!--SUMMARY_END--></FONT></B>
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2012-06-01 06:37:48 UTC 
you need to source /etc/profile to start it.

Sadly I cannot give you any test case.
Comment 4 Elijah "Armageddon" El Lazkani (amd64 AT) 2012-06-01 07:36:00 UTC 
is this what you're looking for ?

<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
<html> <!-- CCP4 HTML LOGFILE -->
<hr>
<!--SUMMARY_END--></FONT></B>
<pre>
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
<pre>
 
 ###############################################################
 ###############################################################
 ###############################################################
 ### CCP4 6.1: Scala                 version 3.3.18 : 21/01/10##
 ###############################################################
 User: armageddon  Run date:  1/ 6/2012 Run time: 03:34:11 


 Please reference: Collaborative Computational Project, Number 4. 1994.
 "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763.
 as well as any specific reference in the program write-up.

<!--SUMMARY_END--></FONT></B>
</pre>
</br>
<a href="#commandsScala">Input commands:</a>
</br>
<a href="#tocScala">Table of contents of logfile:</a>
<pre>


                *******************************************
                *    SCALA - continuous scaling program   *
                *                                         *
                *    Version: 3.3.18                      *
                *    Date   : 2010/01/21                  *
                *                                         *
                *   Phil Evans, MRC LMB, Cambridge, UK    *
                *   pre@mrc-lmb.cam.ac.uk                 *
                *                                         *
                *******************************************


$TEXT:Reference: $$ Please reference $$
P.R.Evans, "Scaling and assessment  of data quality", Acta Cryst. D62, 72-82  (2006).
Note that definitions of Rmeas and Rpim in this paper are missing a square-root on the (n/n-1) factor
$$

>>>>>> CCP4 library signal library_file:Cannot open file (Error)
	 raised in ccp4_file_open2 <<<<<<
>>>>>> CCP4 library signal mtz:Cannot open file (Error)
	 raised in MtzGet <<<<<<
Error: failed to open file for read!
<B><FONT COLOR="#FF0000"><!--SUMMARY_BEGIN-->
 Scala:  *** Failed to open HKLIN file ***
 Scala:  *** Failed to open HKLIN file ***
Times: User:       0.0s System:    0.0s Elapsed:     0:00  
</pre>
</html>
<!--SUMMARY_END--></FONT></B>
Comment 5 Justin Lecher (RETIRED) gentoo-dev 2012-06-01 08:26:32 UTC 
Right, that means it compiles and starts. It is missing input, thats why is looks like this.
Comment 6 Andreas Schürch gentoo-dev 2012-06-01 12:35:14 UTC 
x86 stable, thanks
Comment 7 Agostino Sarubbo gentoo-dev 2012-06-03 19:31:55 UTC 
amd64 stable. Last arch, closing