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Bug 403989 - [science overlay] =dev-libs/intel-common- fails with FEATURES=installsources
Summary: [science overlay] =dev-libs/intel-common- fails with FEATURES=insta...
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
Depends on:
Blocks: intel-compilers
  Show dependency tree
Reported: 2012-02-16 02:19 UTC by Richard Yao (RETIRED)
Modified: 2012-12-10 21:24 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Build log of failure (build.log,22.34 KB, text/plain)
2012-02-16 02:19 UTC, Richard Yao (RETIRED)

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Description Richard Yao (RETIRED) gentoo-dev 2012-02-16 02:19:30 UTC
Created attachment 302103 [details]
Build log of failure

It appears that Intel left references to stuff on the system that compiled the binaries in the files:

installsources: rsyncing source files
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync: link_stat "/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-" failed: No such file or directory (2)
rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1042) [sender=3.0.7]
 * prefixing shebang of home/stonybrook/gentoo/opt/intel/composerxe-2011.6.233/bin/intel64/
 * QA Notice: the following files use invalid (possible non-prefixed) shebangs:
 *   home/stonybrook/gentoo/opt/intel/composerxe-2011.6.233/bin/intel64/loopprofileviewer.csh:/bin/csh (script loopprofileviewer.csh installed in PATH but interpreter /bin/csh not found)
 * ERROR: dev-libs/intel-common- failed:
 *   Aborting due to QA concerns: invalid shebangs found
 * Call stack:
 *, line 1874:  Called install_qa_check
 *, line  253:  Called install_qa_check_prefix
 *, line  982:  Called die
 * The specific snippet of code:
 *              die "Aborting due to QA concerns: invalid shebangs found"
 * If you need support, post the output of 'emerge --info =dev-libs/intel-common-',
 * the complete build log and the output of 'emerge -pqv =dev-libs/intel-common-'.
 * This ebuild used the following eclasses from overlays:
 *   /home/stonybrook/gentoo/var/lib/layman/science/eclass/intel-sdp.eclass
 * This ebuild is from an overlay named 'science': '/home/stonybrook/gentoo/var/lib/layman/science/'
 * The complete build log is located at '/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-'.
 * The ebuild environment file is located at '/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-'.
 * S: '/home/stonybrook/gentoo/var/tmp/portage/dev-libs/intel-common-'

There is also a message about an invalid shebang.

Here is my system information:

$ emerge --info
Portage (prefix/linux/amd64, gcc-4.6.2, unavailable, 2.6.32-220.el6.x86_64 x86_64)
System uname: <censored>
Timestamp of tree: Mon, 13 Feb 2012 22:41:41 +0000
ccache version 3.1.4 [enabled]
app-shells/bash:          4.2_p20::gentoo_prefix
dev-lang/python:          2.7.2-r3::gentoo_prefix
dev-util/ccache:          3.1.4::gentoo_prefix
dev-util/pkgconfig:       0.26::gentoo_prefix
sys-devel/autoconf:       2.68::gentoo_prefix
sys-devel/automake:       1.11.1::gentoo_prefix
sys-devel/binutils:       2.22::gentoo_prefix
sys-devel/gcc:            4.6.2::gentoo_prefix
sys-devel/gcc-config:     1.5-r2::gentoo_prefix
sys-devel/libtool:        2.4-r4::gentoo_prefix
sys-devel/make:           3.82::gentoo_prefix
sys-kernel/linux-headers: 3.2::gentoo_prefix
Repositories: gentoo_prefix local_overlay science
Installed sets: 
CFLAGS="-march=native -O2 -pipe -ggdb3"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/portage /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe -ggdb3"
FEATURES="assume-digests binpkg-logs buildpkg ccache collision-protect compressdebug distlocks ebuild-locks fixlafiles force-prefix installsources news parallel-fetch parallel-install preserve-libs protect-owned sfperms splitdebug strict test test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch webrsync-gpg"
FFLAGS="-march=native -O2 -pipe -ggdb3"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTDIR_OVERLAY="/home/stonybrook/gentoo/usr/local/portage /home/stonybrook/gentoo/var/lib/layman/science"
USE="amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx modules mudflap ncurses nls nptl nptlonly openmp pcre pppd prefix readline session sse sse2 ssl sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Comment 1 Jeremy Olexa (darkside) (RETIRED) archtester gentoo-dev Security 2012-02-21 13:31:02 UTC
I don't think the first problem is prefix related.
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2012-10-28 16:22:42 UTC
what about dev-libs/intel-common-
I cannot reproduce it