In the sci-biology/gbrowse I had a lot more required packages. The official sci-biology/GBrowse ebuild requires much less. Lets come with USE flags to give people a more complete installation. As a startup for the Chado database schema, there is a listing of requirements at: http://gmod.org/wiki/Installing_Chado_on_Ubuntu_HOWTO In sci overlay are for this ready: dev-perl/Bio-BigFile dev-perl/Bio-DB-Das-Chado dev-perl/DBIx-DBStag A good overview of other candidates for USE flag could me made from: http://gmod.org/wiki/GBrowse
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3ef36b7c1ea596ab58fdf49c866e41f3e949f2b3 commit 3ef36b7c1ea596ab58fdf49c866e41f3e949f2b3 Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-03-19 15:39:03 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-03-19 15:39:03 +0000 profiles: last-rite sci-biology/GBrowse Bug: https://bugs.gentoo.org/402849 Bug: https://bugs.gentoo.org/513594 Bug: https://bugs.gentoo.org/690042 Bug: https://bugs.gentoo.org/828702 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 6 ++++++ 1 file changed, 6 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f71d2fd07f0ec1a96b6772fa4412e6ece900c6e2 commit f71d2fd07f0ec1a96b6772fa4412e6ece900c6e2 Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2022-04-17 20:26:33 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2022-04-17 20:26:33 +0000 sci-biology/GBrowse: treeclean Closes: https://bugs.gentoo.org/828702 Closes: https://bugs.gentoo.org/690042 Closes: https://bugs.gentoo.org/513594 Closes: https://bugs.gentoo.org/402849 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 6 -- sci-biology/GBrowse/GBrowse-2.48-r1.ebuild | 71 --------------------- sci-biology/GBrowse/Manifest | 1 - .../GBrowse/files/GBrowseInstall.pm-2.39.patch | 72 ---------------------- sci-biology/GBrowse/metadata.xml | 11 ---- 5 files changed, 161 deletions(-)