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Bug 400885 - sci-biology/gatk-1.4: version bump
Summary: sci-biology/gatk-1.4: version bump
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal enhancement (vote)
Assignee: Andrey Kislyuk (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-01-26 10:33 UTC by Martin Mokrejš
Modified: 2012-01-29 22:10 UTC (History)
1 user (show)

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Runtime testing required: ---

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Description Martin Mokrejš 2012-01-26 10:33:36 UTC 
There is a newer version of gatk. Once can just copy the gatk-1.3.ebuild under gatk-1.4.ebuild but has to change the MYHASH variable. Works for me on ~amd64.

BTW, if one wants to install 1.4-19 version then fetching from GIT repo fails. The ebuild should fiddle a bit with the version variable to suport this numbering scheme.
Comment 1 Martin Mokrejš 2012-01-26 10:44:59 UTC 
Forgot to mention this URL where is a nice listing of all versions available:

ftp://ftp.broadinstitute.org/pub/gsa/GenomeAnalysisTK/
Comment 2 Andrey Kislyuk (RETIRED) gentoo-dev 2012-01-29 22:10:45 UTC 
done