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Bug 387409 - dev-lang/R-2.10.1 fails to emerge with the updated media-libs/libpng-1.5.5
Summary: dev-lang/R-2.10.1 fails to emerge with the updated media-libs/libpng-1.5.5
Status: RESOLVED DUPLICATE of bug 366223
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-10-17 13:32 UTC by gentoo
Modified: 2011-10-17 14:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,107.97 KB, text/plain)
2011-10-17 13:32 UTC, gentoo
Details

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Description gentoo 2011-10-17 13:32:12 UTC
Build.log attached

Reproducible: Always




emerge --info
Portage 2.1.10.27 (default/linux/amd64/10.0/desktop/gnome, gcc-4.5.3, glibc-2.12.2-r0, 2.6.39-gentoo-r3 x86_64)
=================================================================
System uname: Linux-2.6.39-gentoo-r3-x86_64-AMD_Athlon-tm-_II_X2_250_Processor-with-gentoo-2.0.3
Timestamp of tree: Sun, 16 Oct 2011 22:15:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.1-r1, 3.1.3-r1
dev-util/ccache:          2.4-r9
dev-util/cmake:           2.8.4-r1
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.12.2
Repositories:

gentoo
    location: /usr/portage
    sync: rsync://rsync.europe.gentoo.org/gentoo-portage
    priority: -1000

sunrise
    location: /var/lib/layman/sunrise
    masters: gentoo
    priority: 0

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 1

finnish
    location: /var/lib/layman/finnish
    masters: gentoo
    priority: 2

jxh
    location: /var/lib/layman/jxh
    masters: gentoo
    priority: 3

angelos
    location: /var/lib/layman/angelos
    masters: gentoo
    priority: 4

ABI="amd64"
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA skype-eula"
ACCEPT_PROPERTIES="*"
ALSA_CARDS="hda-intel usb-audio"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
ANT_HOME="/usr/share/ant"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="amd64"
AUTOCLEAN="yes"
BUILD_PREFIX="/tmp"
CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump"
CAMERAS="fuji"
CBUILD="x86_64-pc-linux-gnu"
CCACHE_DIR="/var/tmp/ccache"
CCACHE_SIZE="500M"
CFLAGS="-march=native -O2 -pipe"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
COLLISION_IGNORE="/lib/modules"
COLORTERM="gnome-terminal"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-2yts7F6TJk,guid=25147dfb43db2b9ac9358eb500041829"
DEFAULT_ABI="amd64"
DESKTOP_SESSION="gnome"
DISPLAY=":0.0"
DISTDIR="/usr/portage/distfiles"
EDITOR="/bin/nano"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="-a -v --with-bdeps y --quiet-build --keep-going"
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FCFLAGS=""
FEATURES="assume-digests binpkg-logs ccache distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FETCHCOMMAND="/usr/bin/wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
FETCHCOMMAND_SFTP="bash -c "x=\${2#sftp://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec sftp -P \${port} \"\${host}:/\${x#*/}\" \"\$1\"" sftp "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
FFLAGS=""
FLTK_DOCDIR="/usr/share/doc/fltk-1.1.10-r2/html"
GCC_SPECS=""
GDK_USE_XFT="1"
GDMSESSION="gnome"
GDM_LANG="en_GB.UTF-8"
GDM_XSERVER_LOCATION="local"
GENTOO_MIRRORS="ftp://trumpetti.atm.tut.fi/gentoo/ "
GNOME_DESKTOP_SESSION_ID="this-is-deprecated"
GNOME_KEYRING_CONTROL="/tmp/keyring-Xv0drt"
GNOME_KEYRING_PID="25997"
GPG_AGENT_INFO="/tmp/keyring-Xv0drt/gpg:0:1"
GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx"
GRUB_PLATFORMS=""
GSETTINGS_BACKEND="dconf"
GUILE_LOAD_PATH="/usr/share/guile/1.8"
HG="/usr/bin/hg"
HOME="/home/ca"
INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.21.1/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/info"
INPUT_DEVICES="keyboard mouse evdev"
JAVAC="/etc/java-config-2/current-system-vm/bin/javac"
JAVACC_HOME="/usr/share/javacc/"
JAVA_HOME="/etc/java-config-2/current-system-vm"
JDK_HOME="/etc/java-config-2/current-system-vm"
KERNEL="linux"
LANG="en_GB.UTF-8"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LDFLAGS_x86="-m elf_i386"
LIBDIR_amd64="lib64"
LIBDIR_amd64_fbsd="lib64"
LIBDIR_ppc="lib32"
LIBDIR_ppc64="lib64"
LIBDIR_s390="lib32"
LIBDIR_s390x="lib64"
LIBDIR_sparc32="lib32"
LIBDIR_sparc64="lib64"
LIBDIR_x86="lib32"
LIBDIR_x86_fbsd="lib32"
LINGUAS="ca fr fr_CA sv_SE sv da es_ES es es_LA fi it is no nl de ja en_GB en en_US el"
LOGNAME="ca"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
MAKEOPTS="-j3"
MANPATH="/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.21.1/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man:/etc/java-config/system-vm/man/"
MULTILIB_ABIS="amd64 x86"
MULTILIB_STRICT_DENY="64-bit.*shared object"
MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib"
MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev)"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
NOCOLOR="true"
OPENGL_PROFILE="xorg-x11"
ORBIT_SOCKETDIR="/tmp/orbit-ca"
PAGER="/bin/more"
PATH="/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3:/usr/games/bin"
PHP_TARGETS="php5-3"
PKGDIR="/usr/portage/packages"
PORTAGE_ARCHLIST="ppc sparc64-freebsd ppc-openbsd x86-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd x86-cygwin amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib64/portage/bin"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="warn error"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="ca /usr/sbin/sendmail"
PORTAGE_ELOG_SYSTEM="save_summary mail"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}""
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_PYM_PATH="/usr/lib64/portage/pym"
PORTAGE_QUIET="1"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="35"
PORTAGE_SANDBOX_COMPAT_LEVEL="16"
PORTAGE_SYNC_STALE="30"
PORTAGE_TMPDIR="/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/sunrise /var/lib/layman/science /var/lib/layman/finnish /var/lib/layman/jxh /var/lib/layman/angelos"
PORT_LOGDIR_CLEAN="find "${PORT_LOGDIR}" -type f ! -name "summary.log*" -mtime +7 -delete"
PRELINK_PATH_MASK="/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PWD="/home/ca"
PYTHONDONTWRITEBYTECODE="1"
RESUMECOMMAND="/usr/bin/wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
ROOT="/"
ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3"
RPMDIR="/usr/portage/rpm"
RUBYOPT="-rauto_gem"
RUBY_TARGETS="ruby18"
R_HOME="/usr/lib64/R"
SANE_CONFIG_DIR="/etc/sane.d"
SESSION_MANAGER="local/puolukka:@/tmp/.ICE-unix/26011,unix/puolukka:/tmp/.ICE-unix/26011"
SHELL="/bin/bash"
SHLVL="1"
SSH_AGENT_PID="26039"
SSH_AUTH_SOCK="/tmp/keyring-Xv0drt/ssh"
STAGE1_USE="multilib nptl nptlonly unicode"
SYMLINK_LIB="yes"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
TERM="xterm"
USB_DEVFS_PATH="/dev/bus/usb"
USE="3dnow X a52 aac acl acpi alsa amd64 bash-completion berkdb bidi bzip2 cairo cdda cddb cdinstall cdparanoia cdr cjk cli consolekit cracklib crypt css curl curlwrappers custom-cflags cxx dbus djvu dri dts dvd dvdr eds encode evo exif fam fbcon ffmpeg flac fontconfig fortran ftp gdbm gdu gif gimp gnome gnome-keyring gphoto2 gpm gsm gstreamer gtk gtkhtml hardened hddtemp iconv icu idn imagemagick imap ipv6 java javascript jpeg jpeg2k lcms ldap libnotify lm_sensors m17n-lib mad maildir matroska mbox mikmod mime mmap mmx mng modules mp3 mp4 mpeg mpi mudflap multilib musepack mysql nautilus ncurses networkmanager nls nocd nptl nptlonly nsplugin ogg opengl openmp pam pango pcre pda pdf perl png policykit pppd pulseaudio python qt3support qt4 quicktime raw readline rss sasl sdl session sharedmem smp spell sqlite sqlite3 sse sse2 ssl startup-notification subversion svg symlink sysfs syslog sysvipc taglib tcpd theora threads tiff timidity truetype udev unicode usb vcd vorbis wavpack wmf x264 xattr xcb xface xml xorg xulrunner xv xvid zlib" ALSA_CARDS="hda-intel usb-audio" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="fuji" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ca fr fr_CA sv_SE sv da es_ES es es_LA fi it is no nl de ja en_GB en en_US el" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USER="ca"
USERLAND="GNU"
USERNAME="ca"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS DRACUT_MODULES DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS GRUB_PLATFORMS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL OFED_DRIVERS PHP_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XFCE_PLUGINS XTABLES_ADDONS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:repo:env.d"
VIDEO_CARDS="nouveau"
WINDOWID="52428803"
WINDOWPATH="8"
XAUTHORITY="/home/ca/.Xauthority"
XDG_CONFIG_DIRS="/etc/xdg"
XDG_DATA_DIRS="/usr/local/share:/usr/share:/usr/share/gdm"
XDG_MENU_PREFIX="gnome-"
XDG_SESSION_COOKIE="1565ff92d628081204d0952f00000016-1318783012.582896-298662316"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
_="/usr/bin/emerge"
Comment 1 gentoo 2011-10-17 13:32:48 UTC
Created attachment 290073 [details]
build.log
Comment 2 gentoo 2011-10-17 13:35:24 UTC
Probably same bug as in https://bugs.gentoo.org/show_bug.cgi?id=387383
Comment 3 Samuli Suominen (RETIRED) gentoo-dev 2011-10-17 14:12:44 UTC

*** This bug has been marked as a duplicate of bug 366223 ***