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Bug 387223 - dev-lang/R-2.10.1 make error
Summary: dev-lang/R-2.10.1 make error
Status: RESOLVED DUPLICATE of bug 366223
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Unspecified (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-10-15 18:08 UTC by Meconio
Modified: 2011-10-15 18:12 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
Build.log (build.log,146.30 KB, text/x-log)
2011-10-15 18:10 UTC, Meconio
Details

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Description Meconio 2011-10-15 18:08:18 UTC
dev-lang/R-2.10.1 is not compiling on my system:

rbitmap.c: In function ‘my_png_error’:
rbitmap.c:73: error: dereferencing pointer to incomplete type
rbitmap.c: In function ‘R_SaveAsPng’:
rbitmap.c:127: error: dereferencing pointer to incomplete type
make[4]: *** [rbitmap.o] Errore 1
make[4]: *** Attesa dei processi non terminati....
x86_64-pc-linux-gnu-gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fpic  -O2 -fomit-frame-pointer -march=core2 -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=256 -mtune=generic -fvisibility=hidden -c sockconn.c -o sockconn.o
x86_64-pc-linux-gnu-gcc -std=gnu99 -shared -Wl,-O1 -Wl,--as-needed -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR 
make[5]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/internet'
make[5]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/internet'
make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/internet'
make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/internet'
make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/X11'
make[3]: *** [R] Errore 2
make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/X11'
make[2]: *** [make.X11] Errore 2
make[2]: *** Attesa dei processi non terminati....
x86_64-pc-linux-gnu-gcc -std=gnu99 -shared -Wl,-O1 -Wl,--as-needed -o libRlapack.so dlamch.o dlapack0.o dlapack1.o dlapack2.o dlapack3.o dlapack4.o cmplx.o  -lblas   
make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
make[4]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
x86_64-pc-linux-gnu-gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fpic  -O2 -fomit-frame-pointer -march=core2 -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=256 -mtune=generic -c Lapack.c -o Lapack.o
x86_64-pc-linux-gnu-gcc -std=gnu99 -shared -Wl,-O1 -Wl,--as-needed -o lapack.so  Lapack.o  -L../../../lib -lR  -L../../../lib -lRlapack -lblas   -lgfortran -lm
make[5]: Entering directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/lib/libRlapack.so is unchanged
make[5]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
make[4]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
make[3]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules/lapack'
make[2]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src/modules'
make[1]: *** [R] Errore 1
make[1]: Leaving directory `/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1/src'
make: *** [R] Errore 1
emake failed
 * ERROR: dev-lang/R-2.10.1 failed (compile phase):
 *   emake failed
 * 
 * Call stack:
 *     ebuild.sh, line  56:  Called src_compile
 *   environment, line 3037:  Called die
 * The specific snippet of code:
 *       emake || die "emake failed";
 * 
 * If you need support, post the output of 'emerge --info =dev-lang/R-2.10.1',
 * the complete build log and the output of 'emerge -pqv =dev-lang/R-2.10.1'.
 * The complete build log is located at '/var/tmp/portage/dev-lang/R-2.10.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-lang/R-2.10.1/temp/environment'.
 * S: '/var/tmp/portage/dev-lang/R-2.10.1/work/R-2.10.1'


Reproducible: Always




emerge --info
Portage 2.1.10.11 (default/linux/amd64/10.0, gcc-4.4.5, glibc-2.12.2-r0, 3.0.6-gentoo x86_64)
=================================================================
System uname: Linux-3.0.6-gentoo-x86_64-Intel-R-_Core-TM-_i7_CPU_920_@_2.67GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 15 Oct 2011 16:00:01 +0000
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.1-r1, 3.1.3-r1
dev-util/cmake:           2.8.4-r1
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.4.5, 4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.12.2
Repositories: gentoo x-portage
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -fomit-frame-pointer -march=core2 -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=256 -mtune=generic"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo"
CXXFLAGS="-O2 -fomit-frame-pointer -march=core2 -mpopcnt -msse4.2 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=256 -mtune=generic"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--autounmask=n"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://mirror.switch.ch/ftp/mirror/gentoo/ http://gentoo.wheel.sk/ http://de-mirror.org/distro/gentoo/ http://ftp6.uni-erlangen.de/pub/mirrors/gentoo"
LANG="it_IT.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="it en"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit X a52 aac aalib acl acpi aften akonadi alsa amarok2 amd64 amr animgif apache2 archive artworkextra asf aspell auth auto-completion automount avahi bash-completion berkdb bittorrent blender blender-game bluetooth bookmarks bzip2 cairo cdda cddax cddb cdio cdrom cdrtools cli colordiff colors consolekit cpudetection cracklib crypt css cue cups cupsddk custom-optimization cvs cxx dbus device-mapper dhcpcd directfb dri dts dv dvb dvd dvdr emoticons-manager encode facebook fat fbcondecor fbsplash festival ffmpeg firefox3 flac flash fontconfig fortran freetts ftp gconf gdbm gif git gmail gnome gnome-print gpm gps grub gtk gzip hddtemp hfs icons iconv icq ipv6 irc jack java jpeg kde kdm konqueror lame lm_sensors mbrola mediaplayer mercurial midi mmx modules mp4 mpeg mplayer msn msql mudflap multilib musepack musicbrainz mysql ncurses nfs nls nptl nptlonly nsplugin ntfs nvidia opengl openmp openssl pam pcre pda plasma plugins png pnm pppd pulseaudio qt3support qt4 rar readline resolvconf rpm rss samba scanner semantic-desktop session sms spell splash sql sse sse2 sse3 sse4 ssl ssse3 svg svgz sysfs syslog tcl tcpd theora tk tls truetype udev unicode usb v4l v4l2 wav wavpack winetools xcomposite xine xorg youtube zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="cx23885" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="it en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Meconio 2011-10-15 18:10:08 UTC
Created attachment 289889 [details]
Build.log
Comment 2 Samuli Suominen (RETIRED) gentoo-dev 2011-10-15 18:12:52 UTC

*** This bug has been marked as a duplicate of bug 366223 ***