x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunTime.o -MD -MP -MF .deps/RunTime.Tpo -c -o RunTime.o `test -f 'system/RunTime.cc' || echo './'`system/RunTime.cc
This bug is fixed in 38753. Thanks for reporting.
Sorry, I meant to say it's fixed in allpathslg-38573.ebuild. I will drop the older ebuild when the new one is stabilized.
Er. Just realized that sci-biology/allpathslg-37578 is up for stabilization. Backported the one-liner fix and did a silent revision. Sorry for the extra messages.